[ome-users] OME ImageJ problem

[Melissa Linkert]

Hi Juhui,

Ah, I think I see what the problem is.  It looks like the default image
server was set to "localhost" when OME was installed; since the OME plugin
relied on OMEDS to tell it which image server to use, the plugin was trying
to upload to/download from a non-existent server on the client machine.
There will be a permanent fix for this in the next major release of LOCI's
ImageJ plugins.  In the meantime, I would encourage you to try this
pre-release JAR:

http://skyking.microscopy.wisc.edu/melissa/loci_tools.jar

Please let me know if this still does not work.

Regards,
-Melissa

On 5/31/07, WANG Juhui <juhui.wang at jouy.inra.fr> wrote:
>
> HI, Melissa,
>
> I just do a test on the server host. The downloading  task  is
> completed, but the uploading  always stinks a little.
>
> 1) So we are sure it's about remote access problem. Why don't open a
> test server at your local? this might easy the debug work!
> 2) For the uploading, we use the 3D version of tubhiswt_C2.tiff. LOCI
> informs that the task is finished, but  only the first plane is loaded
> into the server, and the status is marked as UNFINISHED.
>
> Best regards!
>
> Juhui
>
> Melissa Linkert a écrit :
>
> > Hi Juhui,
> >
> > I'm sorry to hear that the OME plugin still doesn't work.
> > Unfortunately, I haven't been able to reproduce these problems using
> > the latest version.
> >
> >     >     I would like to upload a test image provided by OME
> >     >     (tubhistwt_C2.tiff)
> >     >     into OME server with imageJ, but failed.   The error message
> >     is :
> >     >
> >     >     >>upload failed
> >     >     >> loci.formats.FormatException:Failed to create thumbail
> >
> >
> > First of all, which version of tubhiswt_C2.tiff are you working with?
> > As far as I know, there is a 2D version (a single 512x512 plane), and
> > a 3D version (20 512x512 planes).  How are you opening this file?  If
> > you are using the Bio-Formats importer, which options are checked?
> >
> >     >     Also, I fail to download images from OME and the errors are:
> >     >
> >     >     > An exception has occurred:
> >     >     org.openmicroscopy.is.ImageServerException: hostname
> >
> >
> > Does this error occur immediately after logging in?
> >
> > Thank you very much for your patience.
> >
> > Regards,
> > -Melissa
> >
> > On 5/30/07, *WANG Juhui* <juhui.wang at jouy.inra.fr
> > <mailto:juhui.wang at jouy.inra.fr>> wrote:
> >
> >     Hi, Melissa,
> >
> >     Thank you for your help, but the same errors persist!
> >
> >     Yours!
> >
> >     Juhui
> >
> >     Melissa Linkert a écrit :
> >
> >     > Hi Juhui,
> >     >
> >     > Today LOCI released a new version of the OME plugin for ImageJ,
> >     which
> >     > should fix this problem.  If you still experience problems,
> >     please let
> >     > me know, and we will investigate further.
> >     >
> >     > Regards,
> >     > -Melissa
> >     >
> >     > On 24/05/07, *WANG Juhui* < juhui.wang at jouy.inra.fr
> >     <mailto:juhui.wang at jouy.inra.fr>
> >     > <mailto:juhui.wang at jouy.inra.fr
> >     <mailto:juhui.wang at jouy.inra.fr>>> wrote:
> >     >
> >     >     Hi,
> >     >
> >     >     I would like to upload a test image provided by OME
> >     >     (tubhistwt_C2.tiff)
> >     >     into OME server with imageJ, but failed.   The error message
> >     is :
> >     >
> >     >     >>upload failed
> >     >     >>loci.formats.FormatException:Failed to create thumbail
> >     >
> >     >     Also, I fail to download images from OME and the errors are:
> >     >
> >     >     > An exception has occurred:
> >     >     org.openmicroscopy.is.ImageServerException: hostname
> >     >
> >     >     Yours!
> >     >
> >     >     --
> >     >     Juhui WANG                                              Email:
> >     >     juhui.wang at jouy.inra.fr <mailto:juhui.wang at jouy.inra.fr>
> >     <mailto: juhui.wang at jouy.inra.fr <mailto:juhui.wang at jouy.inra.fr>>
> >     >     INRA - Mathématiques et Informatique Appliquées
> >     >     Tel:    +(33) 01 34 65 22 29
> >     >     Domaine de
> >     >     Vilvert                                      Fax:    +(33)
> >     01 34
> >     >     65 22 17
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> >     >
> >     >
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> >
> >
> >     --
> >     Juhui
> >     WANG                                              Email:
> juhui.wang at jouy.inra.fr
> >     <mailto:juhui.wang at jouy.inra.fr>
> >     INRA - Mathématiques et Informatique Appliquées
> >     Tel:    +(33) 01 34 65 22 29
> >     Domaine de
> >     Vilvert                                      Fax:    +(33) 01 34
> >     65 22 17
> >     F-78352 Jouy-en-Josas
> >
> >
> >
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>
>
> --
> Juhui WANG                                              Email:
> juhui.wang at jouy.inra.fr
> INRA - Mathématiques et Informatique Appliquées         Tel:    +(33) 01
> 34 65 22 29
> Domaine de Vilvert                                      Fax:    +(33) 01
> 34 65 22 17
> F-78352 Jouy-en-Josas
>
>
>
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