[ome-users] OME ImageJ problem

WANG Juhui juhui.wang at jouy.inra.fr
Thu May 31 09:45:40 BST 2007


HI, Melissa,

I just do a test on the server host. The downloading  task  is 
completed, but the uploading  always stinks a little.

1) So we are sure it's about remote access problem. Why don't open a 
test server at your local? this might easy the debug work!
2) For the uploading, we use the 3D version of tubhiswt_C2.tiff. LOCI 
informs that the task is finished, but  only the first plane is loaded 
into the server, and the status is marked as UNFINISHED.

Best regards!

Juhui

Melissa Linkert a écrit :

> Hi Juhui,
>
> I'm sorry to hear that the OME plugin still doesn't work.  
> Unfortunately, I haven't been able to reproduce these problems using 
> the latest version.
>
>     >     I would like to upload a test image provided by OME
>     >     (tubhistwt_C2.tiff)
>     >     into OME server with imageJ, but failed.   The error message
>     is :
>     >
>     >     >>upload failed
>     >     >> loci.formats.FormatException:Failed to create thumbail
>
>
> First of all, which version of tubhiswt_C2.tiff are you working with?  
> As far as I know, there is a 2D version (a single 512x512 plane), and 
> a 3D version (20 512x512 planes).  How are you opening this file?  If 
> you are using the Bio-Formats importer, which options are checked?
>
>     >     Also, I fail to download images from OME and the errors are:
>     >
>     >     > An exception has occurred:
>     >     org.openmicroscopy.is.ImageServerException: hostname
>
>
> Does this error occur immediately after logging in?
>
> Thank you very much for your patience.
>
> Regards,
> -Melissa
>
> On 5/30/07, *WANG Juhui* <juhui.wang at jouy.inra.fr 
> <mailto:juhui.wang at jouy.inra.fr>> wrote:
>
>     Hi, Melissa,
>
>     Thank you for your help, but the same errors persist!
>
>     Yours!
>
>     Juhui
>
>     Melissa Linkert a écrit :
>
>     > Hi Juhui,
>     >
>     > Today LOCI released a new version of the OME plugin for ImageJ,
>     which
>     > should fix this problem.  If you still experience problems,
>     please let
>     > me know, and we will investigate further.
>     >
>     > Regards,
>     > -Melissa
>     >
>     > On 24/05/07, *WANG Juhui* < juhui.wang at jouy.inra.fr
>     <mailto:juhui.wang at jouy.inra.fr>
>     > <mailto:juhui.wang at jouy.inra.fr
>     <mailto:juhui.wang at jouy.inra.fr>>> wrote:
>     >
>     >     Hi,
>     >
>     >     I would like to upload a test image provided by OME
>     >     (tubhistwt_C2.tiff)
>     >     into OME server with imageJ, but failed.   The error message
>     is :
>     >
>     >     >>upload failed
>     >     >>loci.formats.FormatException:Failed to create thumbail
>     >
>     >     Also, I fail to download images from OME and the errors are:
>     >
>     >     > An exception has occurred:
>     >     org.openmicroscopy.is.ImageServerException: hostname
>     >
>     >     Yours!
>     >
>     >     --
>     >     Juhui WANG                                              Email:
>     >     juhui.wang at jouy.inra.fr <mailto:juhui.wang at jouy.inra.fr>
>     <mailto: juhui.wang at jouy.inra.fr <mailto:juhui.wang at jouy.inra.fr>>
>     >     INRA - Mathématiques et Informatique Appliquées
>     >     Tel:    +(33) 01 34 65 22 29
>     >     Domaine de
>     >     Vilvert                                      Fax:    +(33)
>     01 34
>     >     65 22 17
>     >     F-78352 Jouy-en-Josas
>     >
>     >
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>     >
>     >
>
>
>     --
>     Juhui
>     WANG                                              Email:  juhui.wang at jouy.inra.fr
>     <mailto:juhui.wang at jouy.inra.fr>
>     INRA - Mathématiques et Informatique Appliquées        
>     Tel:    +(33) 01 34 65 22 29
>     Domaine de
>     Vilvert                                      Fax:    +(33) 01 34
>     65 22 17
>     F-78352 Jouy-en-Josas
>
>
>
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-- 
Juhui WANG						Email:	juhui.wang at jouy.inra.fr	
INRA - Mathématiques et Informatique Appliquées		Tel:	+(33) 01 34 65 22 29	
Domaine de Vilvert					Fax: 	+(33) 01 34 65 22 17	
F-78352 Jouy-en-Josas		





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