[ome-users] Image Upload and Java API

[Curtis Rueden]

Hi Nicholas,

There is an OMEIS "UploadFile" call that returns FileIDs. Is this not what
you want?

Also, as I said before, LOCI is currently working on integrating client-side
upload/import logic with our Bio-Formats package. Yes, the pixels will be
parsed on the client side, but Bio-Formats supports a wide variety of
formats. The goal is to make the results as complete as possible (at least
comparable to what you would get using OME's Perl-side import
functionality).

Lastly, in case you were not aware, the uploading code for both VisBio and
the OME Plugin for ImageJ is based on a class called
org.openmicroscopy.ds.tests.TestImport, part of the OME Java package.

-Curtis

On 7/27/06, Nicholas Lahens <lahensn at canisius.edu> wrote:
>
> Hi again,
> I've been experimenting with these importers by attempting to call them
> from a java application using an XMLRpcCaller. To be able to make use of
> these importers through java (and at the command line), I see that the
> desired files must already have been assigned file ID's and therefore must
> have been uploaded to OME in some fashion. Is there a way I can use OME-Java
> to select a file while working on a client machine (from the client
> machine's hard-drive) and upload it to the OME server/machine so that I can
> then use the imageImporters on it? Basically I'm trying to create a little
> test client that will allow a user to select an image file from his/her
> machine and have that file be uploaded and imported into OME. I have taken a
> look at the way VisBio does this, but that is reliant upon the VisBio
> datasets and VisAD for the interpretation for various image formats. OME's
> strength lies in its ability to interpret and properly import a wide variety
> of image types and I would like
> t!
> !
> o be able to just send it an image from a client machine and have OME
> process the file. Ideally I would like to continue using OME-Java to do
> this, but I'll take anything really. Thanks for all the help everyone has
> provided.
>
> Nick
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>
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