[ome-users] installation problem on FC4

Bernd Jagla baj2107 at columbia.edu
Fri Jul 14 15:21:22 BST 2006 

New day, new luck!!!!

Somehow this morning everything worked. 

Thanks for the help...

(Please don't ask what was going on, I have no clue!!!)

Best,

Bernd

|-----Original Message-----
|From: ome-users-bounces at lists.openmicroscopy.org.uk [mailto:ome-users-
|bounces at lists.openmicroscopy.org.uk] On Behalf Of Bernd Jagla
|Sent: Thursday, July 13, 2006 5:00 PM
|To: 'Tom Macura'
|Cc: 'OME users'
|Subject: Re: [ome-users] installation problem on FC4
|
|Now what about this one:
|
|I dropped the database and user ome and still get this message:
|
|Are these values correct ? [y/n]:
|--------------------
| Database Bootstrap
|--------------------
|
|(All verbose information logged in
|/var/tmp/OME/install/CoreDatabaseTablesTask.log)
|
|Finding DB configuration in installation environment [FOUND EXISTING].
|Database connection information
|N.B.:  The database host must already be installed and running.
|It must already be configured for accepting the connection
|specified here, or a superuser connection from user "postgres".
|   Database Delegate Class: OME::Database::PostgresDelegate
|             Database Name: ome
|                      Host: undefined (local)
|                      Port: undefined (default)
|Username for DB connection: undefined (process owner)
|
|Are these values correct ? [y/n]: n
|Enter '\' to set to undefined
|   Database Delegate Class:  [OME::Database::PostgresDelegate]:
|             Database Name:  [ome]:
|                      Host:  [undefined]: localhost
|                      Port:  [undefined]:
|Username for DB connection:  [undefined]:
|
|   Database Delegate Class: OME::Database::PostgresDelegate
|             Database Name: ome
|                      Host: localhost
|                      Port: undefined (default)
|Username for DB connection: undefined (process owner)
|
|Are these values correct ? [y/n]:
|Creating OME PostgreSQL SUPERUSER (ome)[FAILURE].
|
|
|Errors executing task: Unable to create PostgreSQL superuser 'ome', see
|CoreDatabaseTablesTask.log for details.
|Database error: FATAL:  Ident authentication failed for user "postgres"
|
| at (eval 193) line 1
|
| at install.pl line 81
|        main::run_tasks() called at install.pl line 265
|# Looks like your test died before it could output anything.
|
|
|
|
||-----Original Message-----
||From: Tom Macura [mailto:tm289 at cam.ac.uk]
||Sent: Thursday, July 13, 2006 4:33 PM
||To: Bernd Jagla
||Cc: OME users
||Subject: Re: [ome-users] installation problem on FC4
||
||Try running "sudo ome admin configure" on the command line to change
||the URL to the new location of OMEIS. Then try the install again.
||
||Tom
||
||On Jul 13, 2006, at 4:26 PM, Bernd Jagla wrote:
||
||> That worked until OME is trying to connect to OMEIS, which it
||> cannot reach
||> because it still thinks it is on the old computer:
||>
||>
||> Getting a session manager
||> Please log into OME to continue
||> N.B.: This ome experimenter will become the OME super user (no access
||> control)
||> Please login to OME:
||> Username? bernd
||> Password?
||> Great, you're in.
||>
||> Checking OMEIS repository [FAILURE].
||>
||>
||> Errors executing task: OMEIS could not be reached.  Did not get a
||> response
||> from
||> http://rbp05jagla6.cpmc.columbia.edu/cgi-bin/omeis.
||> See /var/tmp/OME/install/ApacheConfigTask.log for more details. at
||> /home/bernd/a
||> llOMEs/newOME/OME/src/perl2/OME/Install/CoreDatabaseTablesTask.pm
||> line 997
||>
||>  at install.pl line 81
||>         main::run_tasks() called at install.pl line 265
||> # Looks like your test died before it could output anything.
||>
||>
||> I guess I am finding "bugs" that only occur in VERY rare cases...
||> Sorry for that....
||>
||> Thanks for the help
||>
||> Bernd
||>
||>
||>
||>
||> |-----Original Message-----
||> |From: Ilya Goldberg [mailto:igg at nih.gov]
||> |Sent: Thursday, July 13, 2006 1:11 PM
||> |To: Bernd Jagla
||> |Cc: 'Josiah Johnston'; ome-users at lists.openmicroscopy.org.uk
||> |Subject: Re: [ome-users] installation problem on FC4
||> |
||> |
||> |On Jul 13, 2006, at 12:01 PM, Bernd Jagla wrote:
||> |
||> |> Josiah,
||> |>
||> |> Thanks for the help and it worked. Well at least this part.
||> |> Now I get the following error message:
||> |
||> |
||> |> Errors executing task: Can't locate object method
||> |> "allow_guest_access" via
||> |> package "OME::Configuration" at
||> |> /home/bernd/allOMEs/newOME/OME/src/perl2/OME/SessionManager.pm line
||> |> 461,
||> |> <STDIN> line 16.
||> |>
||> |>  at install.pl line 81
||> |>         main::run_tasks() called at install.pl line 265
||> |> # Looks like your test died before it could output anything.
||> |
||> |Hi Bernd
||> |Can you update from CVS and try again?
||> |The reason I ask is that there is no call to allow_guest_access on
||> |line 461 of OME/src/perl2/OME/SessionManager.pm in the version on
||> CVS.
||> |There was an update of this stuff yesterday afternoon - it could be
||> |that you got an in-between version?
||> |Sorry about that
||> |-Ilya
||> |
||> |
||> |>
||> |> ====================================
||> |>
||> |> Thanks for the kind help.... ;-)
||> |>
||> |> Best
||> |>
||> |> Bernd
||> |>
||> |>
||> |>
||> |> |-----Original Message-----
||> |> |From: Josiah Johnston [mailto:siah at mac.com]
||> |> |Sent: Wednesday, July 12, 2006 10:20 AM
||> |> |To: Bernd Jagla
||> |> |Cc: ome-users at lists.openmicroscopy.org.uk
||> |> |Subject: Re: [ome-users] installation problem on FC4
||> |> |
||> |> |I think I found your problem.  I left the relevant sections of the
||> |> |installation progress below.
||> |> |
||> |> |Some time in the past, you installed from /home/bernd/ome_cvs/OME,
||> |> and set
||> |> |the developer's HTML templates directory to be underneath that cvs
||> |> checkout.
||> |> |Since then, I believe you deleted or moved that directory. All the
||> |> |installation options, including the developer's template path, are
||> |> stored
||> |> |in /etc/ome-install.store
||> |> |This time around, you installed from /home/bernd/allOMEs/newOME/
||> |> OME, and
||> |> |the installer read your previous settings from the ome-
||> |> install.store file,
||> |> |including the now non-existent directory. When it saw there
||> were no
||> |> |templates at the given path, it tried to copy them, and presumably
||> |> failed
||> |> |because the higher level directories in the
||> |> |"/home/bernd/ome_cvs/OME/src/html/Templates" path no longer
||> existed.
||> |> |
||> |> |
||> |> |Ilya and I are thinking about how to change the installer to
||> |> reduce the
||> |> |risk of something like this happening in the future. In the
||> |> meantime, type
||> |> |"/home/bernd/allOMEs/newOME/OME/src/html/Templates/" when prompted
||> |> for the
||> |> |HTML Templates directory.
||> |> |
||> |> |
||> |> |-Josiah
||> |> |
||> |> |On Jul 11, 2006, at 11:14 AM, Bernd Jagla wrote:
||> |> |
||> |> |
||> |> |	...
||> |> |
||> |> |	Web-UI HTML Templates:
||> |> |
||> |> |	  Developer configuration: yes
||> |> |
||> |> |	 HTML Templates directory:
||> |> /home/bernd/ome_cvs/OME/src/html/Templates
||> |> |
||> |> |
||> |> |
||> |> |	Are these values correct ? [y/n]: y
||> |> |
||> |> |	...
||> |> |
||> |> |	Installing HTML Templates for Web-UI
||> |> |
||> |> |	  \__ Verifying structure of
||> |> |/home/bernd/ome_cvs/OME/src/html/Templates Can't stat
||> |> |/home/bernd/ome_cvs/OME/src/html/Templates: No such file or
||> directory
||> |> |
||> |> |	 at
||/home/bernd/allOMEs/newOME/OME/src/perl2/OME/Install/Util.pm
||> |> line
||> |> |570
||> |> |
||> |> |	[SUCCESS].
||> |> |
||> |> |	Templates structure doesn't exist; it will be created.
||> |> |
||> |> |	  \__ Updating user templates
||> |> |
||> |> |
||> |> |
||> |> |	Errors executing task: Couldn't copy file
||> |> |/home/bernd/allOMEs/newOME/OME/src/html/Templates/Actions/README:
||> |> No such
||> |> |file or directory at
||> |> |/home/bernd/allOMEs/newOME/OME/src/perl2/OME/Install/
||> |> ApacheConfigTask.pm
||> |> |line 1259
||> |> |
||> |> |	 ...
||> |> |
||> |> |
||> |>
||> |>
||> |> _______________________________________________
||> |> ome-users mailing list
||> |> ome-users at lists.openmicroscopy.org.uk
||> |> http://lists.openmicroscopy.org.uk/mailman/listinfo/ome-users
||> |>
||>
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