[ome-users] installation problem on FC4

Tom Macura tm289 at cam.ac.uk
Thu Jul 13 21:32:53 BST 2006


Try running "sudo ome admin configure" on the command line to change  
the URL to the new location of OMEIS. Then try the install again.

Tom

On Jul 13, 2006, at 4:26 PM, Bernd Jagla wrote:

> That worked until OME is trying to connect to OMEIS, which it  
> cannot reach
> because it still thinks it is on the old computer:
>
>
> Getting a session manager
> Please log into OME to continue
> N.B.: This ome experimenter will become the OME super user (no access
> control)
> Please login to OME:
> Username? bernd
> Password?
> Great, you're in.
>
> Checking OMEIS repository [FAILURE].
>
>
> Errors executing task: OMEIS could not be reached.  Did not get a  
> response
> from
> http://rbp05jagla6.cpmc.columbia.edu/cgi-bin/omeis.
> See /var/tmp/OME/install/ApacheConfigTask.log for more details. at
> /home/bernd/a
> llOMEs/newOME/OME/src/perl2/OME/Install/CoreDatabaseTablesTask.pm  
> line 997
>
>  at install.pl line 81
>         main::run_tasks() called at install.pl line 265
> # Looks like your test died before it could output anything.
>
>
> I guess I am finding "bugs" that only occur in VERY rare cases...
> Sorry for that....
>
> Thanks for the help
>
> Bernd
>
>
>
>
> |-----Original Message-----
> |From: Ilya Goldberg [mailto:igg at nih.gov]
> |Sent: Thursday, July 13, 2006 1:11 PM
> |To: Bernd Jagla
> |Cc: 'Josiah Johnston'; ome-users at lists.openmicroscopy.org.uk
> |Subject: Re: [ome-users] installation problem on FC4
> |
> |
> |On Jul 13, 2006, at 12:01 PM, Bernd Jagla wrote:
> |
> |> Josiah,
> |>
> |> Thanks for the help and it worked. Well at least this part.
> |> Now I get the following error message:
> |
> |
> |> Errors executing task: Can't locate object method
> |> "allow_guest_access" via
> |> package "OME::Configuration" at
> |> /home/bernd/allOMEs/newOME/OME/src/perl2/OME/SessionManager.pm line
> |> 461,
> |> <STDIN> line 16.
> |>
> |>  at install.pl line 81
> |>         main::run_tasks() called at install.pl line 265
> |> # Looks like your test died before it could output anything.
> |
> |Hi Bernd
> |Can you update from CVS and try again?
> |The reason I ask is that there is no call to allow_guest_access on
> |line 461 of OME/src/perl2/OME/SessionManager.pm in the version on  
> CVS.
> |There was an update of this stuff yesterday afternoon - it could be
> |that you got an in-between version?
> |Sorry about that
> |-Ilya
> |
> |
> |>
> |> ====================================
> |>
> |> Thanks for the kind help.... ;-)
> |>
> |> Best
> |>
> |> Bernd
> |>
> |>
> |>
> |> |-----Original Message-----
> |> |From: Josiah Johnston [mailto:siah at mac.com]
> |> |Sent: Wednesday, July 12, 2006 10:20 AM
> |> |To: Bernd Jagla
> |> |Cc: ome-users at lists.openmicroscopy.org.uk
> |> |Subject: Re: [ome-users] installation problem on FC4
> |> |
> |> |I think I found your problem.  I left the relevant sections of the
> |> |installation progress below.
> |> |
> |> |Some time in the past, you installed from /home/bernd/ome_cvs/OME,
> |> and set
> |> |the developer's HTML templates directory to be underneath that cvs
> |> checkout.
> |> |Since then, I believe you deleted or moved that directory. All the
> |> |installation options, including the developer's template path, are
> |> stored
> |> |in /etc/ome-install.store
> |> |This time around, you installed from /home/bernd/allOMEs/newOME/
> |> OME, and
> |> |the installer read your previous settings from the ome-
> |> install.store file,
> |> |including the now non-existent directory. When it saw there  
> were no
> |> |templates at the given path, it tried to copy them, and presumably
> |> failed
> |> |because the higher level directories in the
> |> |"/home/bernd/ome_cvs/OME/src/html/Templates" path no longer  
> existed.
> |> |
> |> |
> |> |Ilya and I are thinking about how to change the installer to
> |> reduce the
> |> |risk of something like this happening in the future. In the
> |> meantime, type
> |> |"/home/bernd/allOMEs/newOME/OME/src/html/Templates/" when prompted
> |> for the
> |> |HTML Templates directory.
> |> |
> |> |
> |> |-Josiah
> |> |
> |> |On Jul 11, 2006, at 11:14 AM, Bernd Jagla wrote:
> |> |
> |> |
> |> |	...
> |> |
> |> |	Web-UI HTML Templates:
> |> |
> |> |	  Developer configuration: yes
> |> |
> |> |	 HTML Templates directory:
> |> /home/bernd/ome_cvs/OME/src/html/Templates
> |> |
> |> |
> |> |
> |> |	Are these values correct ? [y/n]: y
> |> |
> |> |	...
> |> |
> |> |	Installing HTML Templates for Web-UI
> |> |
> |> |	  \__ Verifying structure of
> |> |/home/bernd/ome_cvs/OME/src/html/Templates Can't stat
> |> |/home/bernd/ome_cvs/OME/src/html/Templates: No such file or  
> directory
> |> |
> |> |	 at /home/bernd/allOMEs/newOME/OME/src/perl2/OME/Install/Util.pm
> |> line
> |> |570
> |> |
> |> |	[SUCCESS].
> |> |
> |> |	Templates structure doesn't exist; it will be created.
> |> |
> |> |	  \__ Updating user templates
> |> |
> |> |
> |> |
> |> |	Errors executing task: Couldn't copy file
> |> |/home/bernd/allOMEs/newOME/OME/src/html/Templates/Actions/README:
> |> No such
> |> |file or directory at
> |> |/home/bernd/allOMEs/newOME/OME/src/perl2/OME/Install/
> |> ApacheConfigTask.pm
> |> |line 1259
> |> |
> |> |	 ...
> |> |
> |> |
> |>
> |>
> |> _______________________________________________
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> |> ome-users at lists.openmicroscopy.org.uk
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> |>
>
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