[ome-users] installation problem on FC4

[Bernd Jagla]

Josiah,

Thanks for the help and it worked. Well at least this part.
Now I get the following error message:

--------------------
 Database Bootstrap
--------------------

(All verbose information logged in
/var/tmp/OME/install/CoreDatabaseTablesTask.log)

Finding DB configuration in installation environment [FOUND EXISTING].
Database connection information
N.B.:  The database host must already be installed and running.
It must already be configured for accepting the connection
specified here, or a superuser connection from user "postgres".
   Database Delegate Class: OME::Database::PostgresDelegate
             Database Name: ome
                      Host: undefined (local)
                      Port: undefined (default)
Username for DB connection: undefined (process owner)

Are these values correct ? [y/n]: 
Creating OME PostgreSQL SUPERUSER (ome)[SUCCESS].
Creating Apache PostgreSQL SUPERUSER (apache)[SUCCESS].
Creating Admin PostgreSQL SUPERUSER (bernd)[SUCCESS].
Checking database
>From DB, got DB_Version = '2.23'
Found existing database version 2.23.  Database is current.
Loading the database schema
  \__ OME::LookupTable [SUCCESS].
  \__ OME::LookupTable::Entry [SUCCESS].
  \__ OME::DataTable [SUCCESS].
  \__ OME::DataTable::Column [SUCCESS].
  \__ OME::SemanticType [SUCCESS].
  \__ OME::SemanticType::Element [SUCCESS].
  \__ OME::SemanticType::BootstrapExperimenter [SUCCESS].
  \__ OME::SemanticType::BootstrapGroup [SUCCESS].
  \__ OME::SemanticType::BootstrapExperimenterGroup [SUCCESS].
  \__ OME::SemanticType::BootstrapRepository [SUCCESS].
  \__ OME::Dataset [SUCCESS].
  \__ OME::Project [SUCCESS].
  \__ OME::Project::DatasetMap [SUCCESS].
  \__ OME::Image [SUCCESS].
  \__ OME::Image::DatasetMap [SUCCESS].
  \__ OME::Feature [SUCCESS].
  \__ OME::UserState [SUCCESS].
  \__ OME::ViewerPreferences [SUCCESS].
  \__ OME::LSID [SUCCESS].
  \__ OME::Module::Category [SUCCESS].
  \__ OME::Module [SUCCESS].
  \__ OME::Module::FormalInput [SUCCESS].
  \__ OME::Module::FormalOutput [SUCCESS].
  \__ OME::AnalysisChain [SUCCESS].
  \__ OME::AnalysisChain::Node [SUCCESS].
  \__ OME::AnalysisChain::Link [SUCCESS].
  \__ OME::AnalysisPath [SUCCESS].
  \__ OME::AnalysisPath::Map [SUCCESS].
  \__ OME::Analysis::Engine::Worker [SUCCESS].
  \__ OME::ModuleExecution [SUCCESS].
  \__ OME::ModuleExecution::ActualInput [SUCCESS].
  \__ OME::ModuleExecution::SemanticTypeOutput [SUCCESS].
  \__ OME::ModuleExecution::ParentalOutput [SUCCESS].
  \__ OME::ModuleExecution::VirtualMEXMap [SUCCESS].
  \__ OME::AnalysisChainExecution [SUCCESS].
  \__ OME::AnalysisChainExecution::NodeExecution [SUCCESS].
  \__ OME::Task [SUCCESS].
  \__ OME::Configuration::Variable [SUCCESS].
Getting a session manager
Please log into OME to continue
N.B.: This ome experimenter will become the OME super user (no access
control)
Please login to OME:
Username? bernd
Password? 


Errors executing task: Can't locate object method "allow_guest_access" via
package "OME::Configuration" at
/home/bernd/allOMEs/newOME/OME/src/perl2/OME/SessionManager.pm line 461,
<STDIN> line 16.

 at install.pl line 81
        main::run_tasks() called at install.pl line 265
# Looks like your test died before it could output anything.

====================================

Thanks for the kind help.... ;-)

Best

Bernd



|-----Original Message-----
|From: Josiah Johnston [mailto:siah at mac.com]
|Sent: Wednesday, July 12, 2006 10:20 AM
|To: Bernd Jagla
|Cc: ome-users at lists.openmicroscopy.org.uk
|Subject: Re: [ome-users] installation problem on FC4
|
|I think I found your problem.  I left the relevant sections of the
|installation progress below.
|
|Some time in the past, you installed from /home/bernd/ome_cvs/OME, and set
|the developer's HTML templates directory to be underneath that cvs
checkout.
|Since then, I believe you deleted or moved that directory. All the
|installation options, including the developer's template path, are stored
|in /etc/ome-install.store
|This time around, you installed from /home/bernd/allOMEs/newOME/OME, and
|the installer read your previous settings from the ome-install.store file,
|including the now non-existent directory. When it saw there were no
|templates at the given path, it tried to copy them, and presumably failed
|because the higher level directories in the
|"/home/bernd/ome_cvs/OME/src/html/Templates" path no longer existed.
|
|
|Ilya and I are thinking about how to change the installer to reduce the
|risk of something like this happening in the future. In the meantime, type
|"/home/bernd/allOMEs/newOME/OME/src/html/Templates/" when prompted for the
|HTML Templates directory.
|
|
|-Josiah
|
|On Jul 11, 2006, at 11:14 AM, Bernd Jagla wrote:
|
|
|	...
|
|	Web-UI HTML Templates:
|
|	  Developer configuration: yes
|
|	 HTML Templates directory:
/home/bernd/ome_cvs/OME/src/html/Templates
|
|
|
|	Are these values correct ? [y/n]: y
|
|	...
|
|	Installing HTML Templates for Web-UI
|
|	  \__ Verifying structure of
|/home/bernd/ome_cvs/OME/src/html/Templates Can't stat
|/home/bernd/ome_cvs/OME/src/html/Templates: No such file or directory
|
|	 at /home/bernd/allOMEs/newOME/OME/src/perl2/OME/Install/Util.pm
line
|570
|
|	[SUCCESS].
|
|	Templates structure doesn't exist; it will be created.
|
|	  \__ Updating user templates
|
|
|
|	Errors executing task: Couldn't copy file
|/home/bernd/allOMEs/newOME/OME/src/html/Templates/Actions/README: No such
|file or directory at
|/home/bernd/allOMEs/newOME/OME/src/perl2/OME/Install/ApacheConfigTask.pm
|line 1259
|
|	 ...
|
|