[ome-users] question about module execution

[T. J. Macura]

Hi Swaroop,

> Can someone please suggest a way to trigger module executions. the "ome
> execute" command only allows analysis chain execution.
Right. Only Analysis Chains can be executed.

> Can someone point
> me to documentation about analysis chains, modules, formal inputs, 
> formal
> outputs etc. The website provides a conceptual overview - but
> documentation is needed on how to tie the module xml files to perl 
> code,
> details about the syntax of xml files(I know the schema exists).
So I am working on documentation that exactly addresses your questions.
You can see it here: 
http://users.openmicroscopy.org.uk/~tmacur1/OME-WEBSITE/api/xml/

Please read it and if send your specific questions. I will use your 
queries to figure out which parts are unclear and expand the 
documentation.

Are you sure you want to tie module xml files to perl code? Do you 
implement your quantitative image analysis algorithms in perl? Wow!
Yes that is possible and we often use it but only grudgingly to do OME 
trickery. What you probably want is to tie xml files to MATLAB .m 
files.

Tom
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