[ome-users] matlab version

[T. J. Macura]

Hi Anh,

I looked back to the list archive and saw the message you wrote on Jun 
14th.
Sorry I didn't get back to you sooner, I was very busy then and didn't 
have spare time to help users. Your email fell through the cracks.

In fact, now I am on vacation (for 7 days) in Wyoming USA enjoying 
Teton National Forest (near Yellowstone). Hiking, cycling, and 
white-water rafting.
I hope I can make it up to you.

Last week I installed OME from CVS on RH Fedora Core 3.  I was able to 
get the MatlabHandler to work, but only after lots of tweeking.
This necessitated some changes to the installer. So please try to get 
OME from CVS and let me know how it works with importing the Matlab 
Modules.

One thing I had to do (and you probably will have to do as well) is to 
modify ld.so.conf and run /sbin/ldconfig.
Here is the contents of my /etc/ld.so.conf
[tmacur1 at ome2 ~]$ cat /etc/ld.so.conf
include ld.so.conf.d/*.conf
/usr/lib/
/usr/local/lib
/usr/bin/MATLAB7SP2/bin/glnx86
/usr/X11R6/lib

You probably need to change the MATLAB line. You see /usr/local/* etc? 
I added those by hand. Those directories must be put before the MATLAB 
directory so default system libraries (and not system libraries that 
come with MATLAB) are used during linking.

If you have problems with the Module Import once more, please send me 
the error messages and I will get back to you promptly.

Tom

> I'm running OME 2.4.0 on Fedora Core 3 with kernel version 2.6.5. I
> also have matlab R14 running on the server. I have written some matlab
> scripts that perform identification for a given input image and
> outputs some statistical data for that image and I am trying to
> intergrate those scripts into OME so that I can run the analysis and
> store the statistical data into the OME database.
>
> -Anh
>


On Jul 21, 2005, at 12:07 PM, Anh Vu wrote:

> I also have problem with the matlabhandler trying to get it to work
> with OME. Whenever I try to import a matlab module it would fail and
> complains about the matlabhandler, so could anyone help me on that?
> Any suggestion as to what I should do to get it working? I'm using the
> very early release of OME version 2.3.0 btw. I have some basic
> knowledge in Perl, so I can try to modify the code, but then I can't
> narrow down where the problem is.
>
> Anh
>