[ome-devel] Cannot create loci.formats.in.FakeReader object in MATLAB bioformats

[Biofysikos Biologos]

Hi David,

Here are the results I get:
>> [status, version] = bfCheckJavaPath(true)

status =

  logical

   0


version =

  0×0 empty char array

and yes the .jar file is in the same folder as the rest of the MATLAB scripts.

Is it possible that my java version is not up to date? I am using R2017a.

>> version -java

ans =

    'Java 1.7.0_60-b19 with Oracle Corporation Java HotSpot(TM) 64-Bit
Server VM mixed mode'

Best,
Biofysikos

On Wed, Feb 20, 2019 at 3:04 PM David Gault (Staff)
<d.gault at dundee.ac.uk> wrote:
>
> Hi Biofysikos,
>
> It looks as though the bioformats_package jar is not part of the MATLAB path.
> If you run the below it will quickly tell you if the jar can be found and if so which version.
>
> [status, version] = bfCheckJavaPath(true)
>
> Is the bioformats_package jar in the same folder as the rest of the MATLAB scripts?
>
> With Thanks,
> David Gault
>
> On 19 Feb 2019, at 20:48, Biofysikos Biologos <biofysikos at gmail.com> wrote:
>
> Hello,
>
> I have downloaded the latest Bioformats for MATLAB and it seems that
> the .jar file is not loading.
>
> The error I get is the following:
>
> Error using bfopen (line 100)
> Missing Bio-Formats library. Either add bioformats_package.jar to the
> static Java path or add it to the Matlab path.
>
> I have traced it to this line:
>
> reader = javaObject('loci.formats.in.FakeReader');
>
> Any help would be appreciated. Thanks.
>
> Biofysikos
> _______________________________________________
> ome-devel mailing list
> ome-devel at lists.openmicroscopy.org.uk
> http://lists.openmicroscopy.org.uk/mailman/listinfo/ome-devel
>
>
>
> The University of Dundee is a registered Scottish Charity, No: SC015096
> _______________________________________________
> ome-devel mailing list
> ome-devel at lists.openmicroscopy.org.uk
> http://lists.openmicroscopy.org.uk/mailman/listinfo/ome-devel