[ome-devel] Cannot create loci.formats.in.FakeReader object in MATLAB bioformats

[David Gault (Staff)]

Hi Biofysikos,

It looks as though the bioformats_package jar is not part of the MATLAB path.
If you run the below it will quickly tell you if the jar can be found and if so which version.

[status, version] = bfCheckJavaPath(true)

Is the bioformats_package jar in the same folder as the rest of the MATLAB scripts?

With Thanks,
David Gault

On 19 Feb 2019, at 20:48, Biofysikos Biologos <biofysikos at gmail.com<mailto:biofysikos at gmail.com>> wrote:

Hello,

I have downloaded the latest Bioformats for MATLAB and it seems that
the .jar file is not loading.

The error I get is the following:

Error using bfopen (line 100)
Missing Bio-Formats library. Either add bioformats_package.jar to the
static Java path or add it to the Matlab path.

I have traced it to this line:

reader = javaObject('loci.formats.in.FakeReader');

Any help would be appreciated. Thanks.

Biofysikos
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