[ome-devel] omeroweb logging

Paul Korir pkorir at ebi.ac.uk
Wed May 30 09:26:29 BST 2018


Dear Josh,

Thank you very much for responding.

You are right that it entails writing a new view in 
components/tools/OmeroWeb/omeroweb/webgateway/views.py called 
get_z_rois_json which takes an imageId and Z value. There is obviously a 
corresponding change to urls.py for the URLConf.

I'll send you a link on Github soon showing what I've done that you can 
advise whether it's in keeping with your standards. It's basically a 
clone of get_rois_json.

It's working but the issue was that there were no logs at all.

Regards,

Paul K. Korir, PhD
Scientific Programmer
EMBL-EBI
01223494422

On 25/05/2018 17:49, Josh Moore wrote:
> On Thu, May 24, 2018 at 12:33 PM, Paul Korir <pkorir at ebi.ac.uk> wrote:
>> Dear Devs,
> Hi Paul,
>
>
>> I'm trying to add the functionality to extract rois by z by writing a view
>> get_z_rois_json.
> Where are you adding this code? Directly to
> components/tools/OmeroWeb/omeroweb? I'm going to assume so, but we
> likely will want to discuss alternatives. Can you push your changes
> somewhere on GitHub?
>
>
>> However, I can't see debugging info neither in OMERO.web
>> logs nor in nginx logs (acess/error).
> How have you deployed your OMERO.web? If you have nginx working and
> you're not seeing anything in access.log, then something is very
> weird. I wouldn't expect it to be in error.log unless your new
> endpoint is successfully raising a 40x or 50x HTTP code.
>
>
>
>> I'm using the logger specified in
>> python/omeroweb/views.py and even setting it to 'error' (i.e.
>> logger.error('blah')).
> Can you send us the logs that you *do* have?  What does `bin/omero
> admin diagnostics show`?
>
>
>> I'm working with OMERO 5.3.3.
>>
>> I've restarted OMERO, OMERO.web and nginx to no avail.
>>
>> Help will be appreciated in figuring this out as it's very hard to write
>> code blind.
> We can definitely understand that!
>
>
>
>> Regards,
> ~Josh
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