[ome-devel] Loci.formats missing

[Laine, Romain]

Hi David,
Yes, using bioformats_package.jar file from the download link works fine !
Many thanks. I am just not sure why the default bio-formats_plugins.jar in Fiji does not contain all the components.

Thanks again !

Romain



From: ome-devel <ome-devel-bounces at lists.openmicroscopy.org.uk> on behalf of "David Gault (Staff)" <d.gault at dundee.ac.uk>
Reply-To: OME External Developer List <ome-devel at lists.openmicroscopy.org.uk>
Date: Friday, 11 May 2018 at 16:41
To: OME External Developer List <ome-devel at lists.openmicroscopy.org.uk>
Subject: Re: [ome-devel] Loci.formats missing

Hi Romain,

The simplest approach is likely to use the Bio-Formats package from https://www.openmicroscopy.org/bio-formats/downloads/ which contains all of the components and necessary dependencies to read images in ImageJ.

Alternatively below you can find a list of the individual components (you will likely need the listed core components) along with a Maven example of how to add the components to your project:
https://docs.openmicroscopy.org/bio-formats/5.8.2/developers/components.html
https://github.com/ome/bio-formats-examples/blob/master/pom.xml

With thanks,
David Gault

On 11 May 2018, at 15:58, Laine, Romain <r.laine at ucl.ac.uk<mailto:r.laine at ucl.ac.uk>> wrote:

Dear list,
I am developing an ImageJ java plugin using bio-format to load .sdt files using IntelliJ IDEA.
I am trying to use the openImagePlus method as described in the Simple_Read.java example.
However the loci.formats package seems to be missing from the bio-formats_plugins and therefore cannot be imported, so I cannot handle exceptions from openImagePlus.
I am using the latest build bio-formats_plugins-5.9.0-20180430.142015-2.jar

Has anyone encountered/solved that problem?

Many thanks !

Romain


____________________________________
Dr Romain F. Laine, PhD in Biophotonics
PDRA at the Quantitative Imaging and Nanobiophysics group
MRC Laboratory of Molecular Cell Biology (LMCB)
University College London
Gower Street, London, WC1E 6BT
http://www.ucl.ac.uk/lmcb/users/romain-laine

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