[ome-devel] Missing packages in R-omero installation with Docker

[Jean-Marie Burel (Staff)]

Hi Josh

We pushed the version we used for the Users meeting to DockerHub

Could you try:
docker pull openmicroscopy/training-notebooks:0.1.0
and run that image?

I have just tried it again and I could run everything without problem

Cheers
Jmarie

From: ome-devel <ome-devel-bounces at lists.openmicroscopy.org.uk<mailto:ome-devel-bounces at lists.openmicroscopy.org.uk>> on behalf of Joshua S Titlow <joshua.titlow at bioch.ox.ac.uk<mailto:joshua.titlow at bioch.ox.ac.uk>>
Reply-To: OME External Developer List <ome-devel at lists.openmicroscopy.org.uk<mailto:ome-devel at lists.openmicroscopy.org.uk>>
Date: Tuesday, 5 June 2018 at 13:06
To: OME External Developer List <ome-devel at lists.openmicroscopy.org.uk<mailto:ome-devel at lists.openmicroscopy.org.uk>>
Subject: [ome-devel] Missing packages in R-omero installation with Docker

Thanks for making an R notebook with OMERO support!

I installed the notebook with the Docker workflow on Github<https://github.com/ome/training-notebooks> but still seem to be missing packages:
[cid:ii_ji1m0y6n1_163cfbd0d0b41beb]
I thought the idea was that libraries/dependencies would be installed through the Docker image.

Installation with the Docker file went smooth:

> cloned the repository to my machine
> docker build -t training-notebooks .
> docker run -it -p 8888:8888 training-notebook

Any ideas?
Thanks!
j

The University of Dundee is a registered Scottish Charity, No: SC015096
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