[ome-devel] Missing packages in R-omero installation with Docker

[Joshua S Titlow]

Thank you Jmarie,

Working now.

My mistake was trying to run the R notebooks from jupyter lab without using
your Docker command.

All the best,
j



On Tue, Jun 5, 2018 at 4:47 PM, Jean-Marie Burel (Staff) <
j.burel at dundee.ac.uk> wrote:

> Hi Josh
>
> We pushed the version we used for the Users meeting to DockerHub
>
> Could you try:
> docker pull openmicroscopy/training-notebooks:0.1.0
> and run that image?
>
> I have just tried it again and I could run everything without problem
>
> Cheers
> Jmarie
>
> From: ome-devel <ome-devel-bounces at lists.openmicroscopy.org.uk> on behalf
> of Joshua S Titlow <joshua.titlow at bioch.ox.ac.uk>
> Reply-To: OME External Developer List <ome-devel at lists.
> openmicroscopy.org.uk>
> Date: Tuesday, 5 June 2018 at 13:06
> To: OME External Developer List <ome-devel at lists.openmicroscopy.org.uk>
> Subject: [ome-devel] Missing packages in R-omero installation with Docker
>
> Thanks for making an R notebook with OMERO support!
>
> I installed the notebook with the Docker workflow on Github
> <https://github.com/ome/training-notebooks> but still seem to be missing
> packages:
>
> I thought the idea was that libraries/dependencies would be installed
> through the Docker image.
>
> Installation with the Docker file went smooth:
>
> > cloned the repository to my machine
> > docker build -t training-notebooks .
> > docker run -it -p 8888:8888 training-notebook
>
> Any ideas?
> Thanks!
> j
>
> The University of Dundee is a registered Scottish Charity, No: SC015096
>
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