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<div>Hi Josh</div>
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<div>We pushed the version we used for the Users meeting to DockerHub</div>
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<div>Could you try:</div>
<div><span style="font-family: Menlo; font-size: 11px; background-color: rgb(255, 255, 255);">docker pull openmicroscopy/training-notebooks:0.1.0</span></div>
<div>and run that image?</div>
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<div>I have just tried it again and I could run everything without problem</div>
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<div>Cheers</div>
<div>Jmarie</div>
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<span style="font-weight:bold">From: </span>ome-devel <<a href="mailto:ome-devel-bounces@lists.openmicroscopy.org.uk">ome-devel-bounces@lists.openmicroscopy.org.uk</a>> on behalf of Joshua S Titlow <<a href="mailto:joshua.titlow@bioch.ox.ac.uk">joshua.titlow@bioch.ox.ac.uk</a>><br>
<span style="font-weight:bold">Reply-To: </span>OME External Developer List <<a href="mailto:ome-devel@lists.openmicroscopy.org.uk">ome-devel@lists.openmicroscopy.org.uk</a>><br>
<span style="font-weight:bold">Date: </span>Tuesday, 5 June 2018 at 13:06<br>
<span style="font-weight:bold">To: </span>OME External Developer List <<a href="mailto:ome-devel@lists.openmicroscopy.org.uk">ome-devel@lists.openmicroscopy.org.uk</a>><br>
<span style="font-weight:bold">Subject: </span>[ome-devel] Missing packages in R-omero installation with Docker<br>
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<div dir="ltr">Thanks for making an R notebook with OMERO support!
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I installed the notebook with the <a href="https://github.com/ome/training-notebooks">
Docker workflow on Github</a> but still seem to be missing packages:</div>
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<div><img src="cid:ii_ji1m0y6n1_163cfbd0d0b41beb" width="562" height="145"><br>
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I thought the idea was that libraries/dependencies would be installed through the Docker image.</div>
<div style="color:rgb(34,34,34);font-family:arial,sans-serif;font-size:small;font-style:normal;font-variant-ligatures:normal;font-variant-caps:normal;font-weight:400;letter-spacing:normal;text-align:start;text-indent:0px;text-transform:none;white-space:normal;word-spacing:0px;background-color:rgb(255,255,255);text-decoration-style:initial;text-decoration-color:initial">
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<span style="color:rgb(34,34,34);font-family:arial,sans-serif;font-size:small;font-style:normal;font-variant-ligatures:normal;font-variant-caps:normal;font-weight:400;letter-spacing:normal;text-align:start;text-indent:0px;text-transform:none;white-space:normal;word-spacing:0px;background-color:rgb(255,255,255);text-decoration-style:initial;text-decoration-color:initial;float:none;display:inline">Installation
with the Docker file went smooth:</span><br>
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<div style="color:rgb(34,34,34);font-family:arial,sans-serif;font-size:small;font-style:normal;font-variant-ligatures:normal;font-variant-caps:normal;font-weight:400;letter-spacing:normal;text-align:start;text-indent:0px;text-transform:none;white-space:normal;word-spacing:0px;background-color:rgb(255,255,255);text-decoration-style:initial;text-decoration-color:initial">
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<div style="color:rgb(34,34,34);font-family:arial,sans-serif;font-size:small;font-style:normal;font-variant-ligatures:normal;font-variant-caps:normal;font-weight:400;letter-spacing:normal;text-align:start;text-indent:0px;text-transform:none;white-space:normal;word-spacing:0px;background-color:rgb(255,255,255);text-decoration-style:initial;text-decoration-color:initial">
> cloned the repository to my machine</div>
<div style="color:rgb(34,34,34);font-family:arial,sans-serif;font-size:small;font-style:normal;font-variant-ligatures:normal;font-variant-caps:normal;font-weight:400;letter-spacing:normal;text-align:start;text-indent:0px;text-transform:none;white-space:normal;word-spacing:0px;background-color:rgb(255,255,255);text-decoration-style:initial;text-decoration-color:initial">
> docker build -t training-notebooks .</div>
<div style="color:rgb(34,34,34);font-family:arial,sans-serif;font-size:small;font-style:normal;font-variant-ligatures:normal;font-variant-caps:normal;font-weight:400;letter-spacing:normal;text-align:start;text-indent:0px;text-transform:none;white-space:normal;word-spacing:0px;background-color:rgb(255,255,255);text-decoration-style:initial;text-decoration-color:initial">
> docker run -it -p 8888:8888 training-notebook</div>
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Any ideas?</div>
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Thanks!</div>
<span class="gmail-m_-6271941052498847771HOEnZb" style="color:rgb(34,34,34);font-family:arial,sans-serif;font-size:small;font-style:normal;font-variant-ligatures:normal;font-variant-caps:normal;font-weight:400;letter-spacing:normal;text-align:start;text-indent:0px;text-transform:none;white-space:normal;word-spacing:0px;background-color:rgb(255,255,255);text-decoration-style:initial;text-decoration-color:initial"><font color="#888888">
<div>j</div>
</font></span></div>
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