[ome-devel] OMERO 5.3.3 and CellProfiler "LoadData" module

Emil Rozbicki emil at glencoesoftware.com
Wed Sep 13 09:42:15 BST 2017


Hi Kai,

Have you also updated CellProfiler's OMERO jars? It's possible that your
CellProfiler installation is still using OMERO 5.2 jars hence the
connection issue.

If that's the case the simplest solution is to replace the jars to match
your server version. Alternative solution is to use python readers instead
of java readers - details here:
https://github.com/CellProfiler/CellProfiler/issues/1772. It needs some
work to set it up put pays back on performance and the issue free upgrades.

Cheers,
Emil

On Tue, Sep 12, 2017 at 5:19 PM, Kai Schleicher <kai.schleicher at unibas.ch>
wrote:

> Hi,
>
> We were using CellProfilers "LoadData" module successfully with OMERO
> 5.2.4 to fetch images directly from OMERO.
>
> We recently upgraded to the really awesome OMERO 5.3.3 (yay :)), but
> coincidentally we seem to now have issues using CPs LoadData module to
> fetch the images.
>
> Can you confirm if this connection is still possible with OMERO 5.3.3 or
> if there is maybe an issue?
>
> Thanks for your help and cheers,
> Kai
>
> --
>
>> Please note my NEW PHONE NUMBERS: +41 61 207 57 31 (direct) +41 61 207
>>> 22 50 (central)<<
>>>
>> Kai Schleicher, PhD | Research Associate in Advanced Light Microscopy |
> Biozentrum, University of Basel | Klingelbergstrasse 50/70 | CH-4056 Basel |
> Phone: +41 61 207 57 31 (direct) +41 61 207 22 50 (central) |
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>
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