[ome-devel] OMERO 5.3.3 and CellProfiler "LoadData" module

[Laurent Guerard]

Hi Emil,

If I understood everything, all the jars are part of the prokaryote.jar 
which I would need to extract and rearchive right ?

Using python readers would be the best solution indeed, and we would be 
interested in that. However, since we would need to fix this on multiple 
computers, is it easily deployable ? And would you have some 
documentation on how to set it up ? :)

Thanks again !

Best,

---------------
Laurent Guerard


On 13/09/2017 10:42, Emil Rozbicki wrote:
> Hi Kai,
>
> Have you also updated CellProfiler's OMERO jars? It's possible that 
> your CellProfiler installation is still using OMERO 5.2 jars hence the 
> connection issue.
>
> If that's the case the simplest solution is to replace the jars to 
> match your server version. Alternative solution is to use python 
> readers instead of java readers - details here: 
> https://github.com/CellProfiler/CellProfiler/issues/1772. It needs 
> some work to set it up put pays back on performance and the issue free 
> upgrades.
>
> Cheers,
> Emil
>
> On Tue, Sep 12, 2017 at 5:19 PM, Kai Schleicher 
> <kai.schleicher at unibas.ch <mailto:kai.schleicher at unibas.ch>> wrote:
>
>     Hi,
>
>     We were using CellProfilers "LoadData" module successfully with
>     OMERO 5.2.4 to fetch images directly from OMERO.
>
>     We recently upgraded to the really awesome OMERO 5.3.3 (yay :)),
>     but coincidentally we seem to now have issues using CPs LoadData
>     module to fetch the images.
>
>     Can you confirm if this connection is still possible with OMERO
>     5.3.3 or if there is maybe an issue?
>
>     Thanks for your help and cheers,
>     Kai
>
>     -- 
>
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>
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