[ome-devel] Examples of using RawPixelsStore setPlane

Curtis Rueden ctrueden at wisc.edu
Fri May 15 21:20:16 BST 2015


Hi everyone,

I am trying to fix a long-standing ImageJ-OMERO bug relating to the upload
of multichannel images [1].

I thought I had found the obvious problem, but the expected bug-fix [2]
does not actually fix it. Instead, it seems to make things worse somehow
[3] (upload barfs on the first plane, rather than the second).

I was wondering if there are any examples of using the RawPixelsStore
service to upload multichannel image data. I saw the RawPixelsStoreTest
integration test [4], but it only tests for single-channel data.

Relatedly: I am still developing against a dev_5_0 omero_client uber-JAR.
I'd be happy to try again with 5.0.8, but only if there is a solid reason
to believe it might improve the situation?

Thanks,
Curtis

[1] https://github.com/imagej/imagej-omero/issues/55

[2] https://github.com/imagej/imagej-omero/compare/issue-55

[3] https://gist.github.com/ctrueden/f960d3d7e67b957d4d9e

[4]
https://github.com/openmicroscopy/openmicroscopy/blob/v5.1.1/components/tools/OmeroJava/test/integration/RawPixelsStoreTest.java
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