[ome-devel] Status of latest version of figure making and auto-tagging

Douglas Russell douglas_russell at hms.harvard.edu
Wed Jun 3 14:19:42 BST 2015


We had talked about a few ideas that I might have been able to make use of
in webtagging. E.g. maintaining graph of how tags relate to each other. I
wasn't expecting to see anything like that in the short term really. Tags
with types and values and the interpretation of what it means to be a
tagset were other examples.

I had been intending to improve the tag search a lot by integrating it with
the data tree, which is why I did all the work on the webclient as I needed
the jstree upgrade to do what I needed. That hasn't made it in yet, but I
have no bandwidth to do anything more than bugfixing webtagging for the
forseeable future, so there isn't a great deal of rush there although it
would of course be good to see those upgrades. Talking with Will, it sounds
like it might be desirable instead to at some point integrate some
incarnation of the tag search in the general search.

Cheers,

Douglas



On 2 June 2015 at 16:44, William Moore <will at lifesci.dundee.ac.uk> wrote:

> Hi Ilan,
>
>  You can see the list of releases at
> http://will-moore.github.io/figure/#releases.
> The last one is 1.1.1 but the last major one is 1.1.0 that included the
> ability to "crop"
> an image to a chosen region (optionally using existing ROIs in OMERO)
> based on
> your feedback. You can see more details with a youtube demo at:
>  http://will-moore.github.io/figure/2015/04/20/release-1.1.0.html
>
> I'm not sure exactly what model changes that Douglas was asking for, but
> I'll chat since he's here in Paris.
> But if it is the "projection of permissions" issue that I think it is,
> then I don't think there has been
> any progress on that.
> We'll discuss and let you know.
>
>  Regards,
>
>    Will.
>
>
> On 2 Jun 2015, at 14:11, Ilan Davis <ilan.davis at bioch.ox.ac.uk> wrote:
>
>  Hi
>
> I would appreciate it if someone could update us at Micron Oxford, on what
> is the latest version of the fantastic figure making module in OMERO.
> We gave a bunch of feedback about how to make it really very useful as a
> day to day too, but I am not aware of anyone finding back what happened
> and whether the ideas were implemented. Also, Douglas Russell had created
> an auto tagging module that was a great start, but he was waiting for
> the OMERO team to change the model to allow more sophisticated
> organisation of the data in the database.
> Is this in progress too?
>
>  Would be great if someone can outline the roadmap plans for these two
> fantastic additions to the capabilities of OMERO.
>
>  many thanks
> regards
> Ilan
>
>
>
> ____________________________________________________________________________
> *Prof. Ilan Davis   ilan.davis at bioch.ox.ac.uk
> <ilan.davis at bioch.ox.ac.uk>   Web site: http://www.ilandavis.com
> <http://www.ilandavis.com/>*
> Department of Biochemistry, The University of Oxford, South Parks
> Road, OXFORD OX1 3QU, UK
> Direct Office No: (44) (0)1865 613265  Office Fax: (44) (0)1865 613340
> Lab manager: Dr Darragh Ennnis darragh.ennis at bioch.ox.ac.uk (44) (0)1865
> 613271 / 613272
> PA: Sian Annely sian.annely at bioch.ox.ac.uk  (44) (0)1865 613218
>
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