[ome-devel] bfconvert exports only one channel using -z and -timepoint arguments

[Dmitry Fedorov]

Awesome, thank you!

On Wed, Mar 19, 2014 at 8:16 AM, Balaji Ramalingam
<b.ramalingam at dundee.ac.uk> wrote:
> Hi,
>
> We have tested the bug locally and were able to reproduce it.
> I have created a ticket on this regard,
> https://trac.openmicroscopy.org.uk/ome/ticket/12110
>
> will get looked upon soon.
>
> Best,
> Balaji
>
> On 16/03/2014 00:04, "Dmitry Fedorov" <fedorov at ece.ucsb.edu> wrote:
>
>>Hi,
>>
>>I'm using the latest (5.0.0) bioformats command bfconvert to extract a
>>plane form an image. The command line looks something like this:
>>    bfconvert INPUT out.z0.t0.ome.tif -bigtiff -compression LZW -z 0
>>-timepoint 0
>>
>>I'm not specifying -channel but yet the output file only contains the
>>first channel in the proper Z and T position. I have also tried the
>>same command using the 4.4.X series to the same effect.
>>
>>If I convert the whole image without specifying -x and -timepoint the
>>output image contain all the input channels.
>>
>>Is it possible to extract a specific geometric position (T,Z) but
>>preserve all input channels?
>>
>>Thanks you,
>>dmitry
>>
>>--
>>__________________________________
>>
>>Dmitry Fedorov Levit <dima at dimin.net>
>>Web: http://www.dimin.net/
>>__________________________________
>>
>>Center for Bio-Image Informatics:
>>  <http://www.bioimage.ucsb.edu/>
>>
>>Vision Research Lab, Electrical and Computer Engineering:
>>  <http://vision.ece.ucsb.edu/>
>>
>>University of California, Santa Barbara
>>_________________________________
>>_______________________________________________
>>ome-devel mailing list
>>ome-devel at lists.openmicroscopy.org.uk
>>http://lists.openmicroscopy.org.uk/mailman/listinfo/ome-devel
>
>
> The University of Dundee is a registered Scottish Charity, No: SC015096



-- 
__________________________________

Dmitry Fedorov Levit <dima at dimin.net>
Web: http://www.dimin.net/
__________________________________

Center for Bio-Image Informatics:
  <http://www.bioimage.ucsb.edu/>

Vision Research Lab, Electrical and Computer Engineering:
  <http://vision.ece.ucsb.edu/>

University of California, Santa Barbara
_________________________________