[ome-devel] bfconvert exports only one channel using -z and -timepoint arguments

[Balaji Ramalingam]

Hi,

We have tested the bug locally and were able to reproduce it.
I have created a ticket on this regard,
https://trac.openmicroscopy.org.uk/ome/ticket/12110

will get looked upon soon.

Best,
Balaji

On 16/03/2014 00:04, "Dmitry Fedorov" <fedorov at ece.ucsb.edu> wrote:

>Hi,
>
>I'm using the latest (5.0.0) bioformats command bfconvert to extract a
>plane form an image. The command line looks something like this:
>    bfconvert INPUT out.z0.t0.ome.tif -bigtiff -compression LZW -z 0
>-timepoint 0
>
>I'm not specifying -channel but yet the output file only contains the
>first channel in the proper Z and T position. I have also tried the
>same command using the 4.4.X series to the same effect.
>
>If I convert the whole image without specifying -x and -timepoint the
>output image contain all the input channels.
>
>Is it possible to extract a specific geometric position (T,Z) but
>preserve all input channels?
>
>Thanks you,
>dmitry
>
>--
>__________________________________
>
>Dmitry Fedorov Levit <dima at dimin.net>
>Web: http://www.dimin.net/
>__________________________________
>
>Center for Bio-Image Informatics:
>  <http://www.bioimage.ucsb.edu/>
>
>Vision Research Lab, Electrical and Computer Engineering:
>  <http://vision.ece.ucsb.edu/>
>
>University of California, Santa Barbara
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