[ome-devel] Fwd: Prereleases of python-javabridge and python-bioformats

[Curtis Rueden]

Hi Lee,

> Both Javabridge and python-bioformats are now Python packages

That is awesome! Thank you very much for putting in the extra effort to
make these tools easier for others to consume. You guys rock!

Cheers,
Curtis


On Thu, Mar 6, 2014 at 3:27 PM, Lee Kamentsky <leek at broadinstitute.org>wrote:

> OK here it is. Kudos to Vebjorn. Both Javabridge and python-bioformats are
> now Python packages, apart from CellProfiler as listed below.
>
> ---------- Forwarded message ----------
> From: Vebjorn Ljosa <ljosa at broad.mit.edu>
> Date: Thu, Mar 6, 2014 at 3:52 PM
> Subject: Prereleases of python-javabridge and python-bioformats
> To: cellprofiler-dev <cellprofiler-dev at broadinstitute.org>
> Cc: Lee Kamentsky <leek at broadinstitute.org>
>
>
> We have extracted CellProfiler's Python wrappers for JNI and
> Bioformats and made them into separate packages. Prereleases are now
> up on PyPI, and we'd appreciate if someone would try them out and give
> feedback.
>
> (Lee, I think you know some people who have expressed interest. Can
> you please tell them?)
>
> Vebjorn
>
>
> The javabridge Python package makes it easy to start a Java virtual
> machine (JVM) from Python and interact with it. Python code can
> interact with the JVM using a low-level API or a more convenient
> high-level API.
>
> PyPI record: https://pypi.python.org/pypi/javabridge
>
> Documentation: http://pythonhosted.org/javabridge/
>
> GitHub repository: https://github.com/CellProfiler/python-javabridge
>
> Report bugs here: https://github.com/CellProfiler/python-javabridge/issues
>
> python-javabridge is licensed under the BSD license. See the
> accompanying file LICENSE for details.
>
>
>
> Python-bioformats is a Python wrapper for Bio-Formats, a standalone
> Java library for reading and writing life sciences image file formats.
> Bio-Formats is capable of parsing both pixels and metadata for a large
> number of formats, as well as writing to several formats.
> Python-bioformats uses the python-javabridge to start a Java virtual
> machine from Python and interact with it. Python-bioformats was
> developed for and is used by the cell image analysis software
> CellProfiler (cellprofiler.org).
>
> PyPI record: https://pypi.python.org/pypi/python-bioformats
>
> Documentation: http://pythonhosted.org/python-bioformats/
>
> GitHub repository: https://github.com/CellProfiler/python-bioformats
>
> Report bugs here: https://github.com/CellProfiler/python-bioformats/issues
>
> python-bioformats is licensed under the BSD license. See the
> accompanying file LICENSE for details.
>
>
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