[ome-devel] Fwd: Prereleases of python-javabridge and python-bioformats

[Lee Kamentsky]

OK here it is. Kudos to Vebjorn. Both Javabridge and python-bioformats are
now Python packages, apart from CellProfiler as listed below.

---------- Forwarded message ----------
From: Vebjorn Ljosa <ljosa at broad.mit.edu>
Date: Thu, Mar 6, 2014 at 3:52 PM
Subject: Prereleases of python-javabridge and python-bioformats
To: cellprofiler-dev <cellprofiler-dev at broadinstitute.org>
Cc: Lee Kamentsky <leek at broadinstitute.org>


We have extracted CellProfiler's Python wrappers for JNI and
Bioformats and made them into separate packages. Prereleases are now
up on PyPI, and we'd appreciate if someone would try them out and give
feedback.

(Lee, I think you know some people who have expressed interest. Can
you please tell them?)

Vebjorn


The javabridge Python package makes it easy to start a Java virtual
machine (JVM) from Python and interact with it. Python code can
interact with the JVM using a low-level API or a more convenient
high-level API.

PyPI record: https://pypi.python.org/pypi/javabridge

Documentation: http://pythonhosted.org/javabridge/

GitHub repository: https://github.com/CellProfiler/python-javabridge

Report bugs here: https://github.com/CellProfiler/python-javabridge/issues

python-javabridge is licensed under the BSD license. See the
accompanying file LICENSE for details.



Python-bioformats is a Python wrapper for Bio-Formats, a standalone
Java library for reading and writing life sciences image file formats.
Bio-Formats is capable of parsing both pixels and metadata for a large
number of formats, as well as writing to several formats.
Python-bioformats uses the python-javabridge to start a Java virtual
machine from Python and interact with it. Python-bioformats was
developed for and is used by the cell image analysis software
CellProfiler (cellprofiler.org).

PyPI record: https://pypi.python.org/pypi/python-bioformats

Documentation: http://pythonhosted.org/python-bioformats/

GitHub repository: https://github.com/CellProfiler/python-bioformats

Report bugs here: https://github.com/CellProfiler/python-bioformats/issues

python-bioformats is licensed under the BSD license. See the
accompanying file LICENSE for details.
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