[ome-devel] Contrast settings in OME

[Curtis Rueden]

Hi Hadrien,

> I didn't find in OME specification a way to specify contrast and
> display settings in OME.

Unfortunately, the OME-XML schema itself currently has no place for display
min/max per channel.

> So when I open an OME Tiff in Fiji with LOCI I don't have to manually
> open Image > Adjust > Brightness/Contrast and click auto to be able to
> correctly view my images.

If you check the "Autoscale" box in the Bio-Formats Importer Options
dialog, it will autoscale right away for you without needing to bring up
the B&C dialog.

> If OME does not support that, what do you think about including it ?

Sure, we have a ticket for it:
http://trac.openmicroscopy.org.uk/ome/ticket/11236

Regards,
Curtis


On Wed, Nov 13, 2013 at 11:26 AM, Hadrien Mary <hadrien.mary at gmail.com>wrote:

> Or maybe someone has a trick to automatically call "Auto contrast" each
> time an OME file is opened :-)
>
>
> --
> Hadrien Mary
>
> Ph.D student in Biology
> Tournier-Gachet Team
> CNRS - LBCMCP - UMR 5088
>
> Université de Toulouse - Bât. 4R3B1
> 118, route de Narbonne - 31062 Toulouse
>
>
> On Wed, Nov 13, 2013 at 6:23 PM, Hadrien Mary <hadrien.mary at gmail.com>wrote:
>
>> Hi,
>>
>> I didn't find in OME specification a way to specify contrast and display
>> settings in OME. So when I open an OME Tiff in Fiji with LOCI I don't have
>> to manually open Image > Adjust > Brightness/Contrast and click auto to be
>> able to correctly view my images.
>>
>> If there is a way, tell me and I will ask to MM developpers to add it in
>> their OME implementation. If OME does not support that, what do you think
>> about including it ? Do it make sense to you ?
>>
>> Best,
>>
>> --
>> Hadrien Mary
>>
>> Ph.D student in Biology
>> Tournier-Gachet Team
>> CNRS - LBCMCP - UMR 5088
>>
>> Université de Toulouse - Bât. 4R3B1
>> 118, route de Narbonne - 31062 Toulouse
>>
>
>
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>
>
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