[ome-devel] Contrast settings in OME

[Hadrien Mary]

Thank you for the answer. So I will wait OME include display settings. I
already noticed the "autoscale button" on the BF Importer dialog but
unfortunatly it's disable for virtual stack files and I often use virtual
stack option. Can we imagine to enable autoscale button for virtual stack
and only compute the best contrast for the current image ?

Best,


--
Hadrien Mary

Ph.D student in Biology
Tournier-Gachet Team
CNRS - LBCMCP - UMR 5088

Université de Toulouse - Bât. 4R3B1
118, route de Narbonne - 31062 Toulouse


On Wed, Nov 13, 2013 at 7:01 PM, Curtis Rueden <ctrueden at wisc.edu> wrote:

> Hi Hadrien,
>
> > I didn't find in OME specification a way to specify contrast and
> > display settings in OME.
>
> Unfortunately, the OME-XML schema itself currently has no place for
> display min/max per channel.
>
> > So when I open an OME Tiff in Fiji with LOCI I don't have to manually
> > open Image > Adjust > Brightness/Contrast and click auto to be able to
> > correctly view my images.
>
> If you check the "Autoscale" box in the Bio-Formats Importer Options
> dialog, it will autoscale right away for you without needing to bring up
> the B&C dialog.
>
> > If OME does not support that, what do you think about including it ?
>
> Sure, we have a ticket for it:
> http://trac.openmicroscopy.org.uk/ome/ticket/11236
>
> Regards,
> Curtis
>
>
> On Wed, Nov 13, 2013 at 11:26 AM, Hadrien Mary <hadrien.mary at gmail.com>wrote:
>
>> Or maybe someone has a trick to automatically call "Auto contrast" each
>> time an OME file is opened :-)
>>
>>
>> --
>> Hadrien Mary
>>
>> Ph.D student in Biology
>> Tournier-Gachet Team
>> CNRS - LBCMCP - UMR 5088
>>
>> Université de Toulouse - Bât. 4R3B1
>> 118, route de Narbonne - 31062 Toulouse
>>
>>
>> On Wed, Nov 13, 2013 at 6:23 PM, Hadrien Mary <hadrien.mary at gmail.com>wrote:
>>
>>> Hi,
>>>
>>> I didn't find in OME specification a way to specify contrast and display
>>> settings in OME. So when I open an OME Tiff in Fiji with LOCI I don't have
>>> to manually open Image > Adjust > Brightness/Contrast and click auto to be
>>> able to correctly view my images.
>>>
>>> If there is a way, tell me and I will ask to MM developpers to add it in
>>> their OME implementation. If OME does not support that, what do you think
>>> about including it ? Do it make sense to you ?
>>>
>>> Best,
>>>
>>> --
>>> Hadrien Mary
>>>
>>> Ph.D student in Biology
>>> Tournier-Gachet Team
>>> CNRS - LBCMCP - UMR 5088
>>>
>>> Université de Toulouse - Bât. 4R3B1
>>> 118, route de Narbonne - 31062 Toulouse
>>>
>>
>>
>> _______________________________________________
>> ome-devel mailing list
>> ome-devel at lists.openmicroscopy.org.uk
>> http://lists.openmicroscopy.org.uk/mailman/listinfo/ome-devel
>>
>>
>
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