<div dir="ltr">Hi Hadrien,<div><br></div><div><div>> I didn't find in OME specification a way to specify contrast and</div><div>> display settings in OME.</div></div><div><br></div><div><div>Unfortunately, the OME-XML schema itself currently has no place for display min/max per channel.</div>
<div><br></div><div><div>> So when I open an OME Tiff in Fiji with LOCI I don't have to manually<br></div></div></div><div><div>> open Image > Adjust > Brightness/Contrast and click auto to be able to</div>
<div>> correctly view my images.</div></div><div><br></div><div>If you check the "Autoscale" box in the Bio-Formats Importer Options dialog, it will autoscale right away for you without needing to bring up the B&C dialog.</div>
<div><br></div><div><div><div>> If OME does not support that, what do you think about including it ?</div><div><br></div><div>Sure, we have a ticket for it:</div><div><a href="http://trac.openmicroscopy.org.uk/ome/ticket/11236">http://trac.openmicroscopy.org.uk/ome/ticket/11236</a></div>
<div><br></div></div><div></div></div><div>Regards,<br></div><div>Curtis</div></div><div class="gmail_extra"><br><br><div class="gmail_quote">On Wed, Nov 13, 2013 at 11:26 AM, Hadrien Mary <span dir="ltr"><<a href="mailto:hadrien.mary@gmail.com" target="_blank">hadrien.mary@gmail.com</a>></span> wrote:<br>
<blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex"><div dir="ltr">Or maybe someone has a trick to automatically call "Auto contrast" each time an OME file is opened :-)</div>
<div class="gmail_extra"><div class="im"><br clear="all"><div><div dir="ltr"><br>--<br>Hadrien Mary<div><br>
</div><div>Ph.D student in Biology</div><div>Tournier-Gachet Team</div><div>CNRS - LBCMCP - UMR 5088<div><div><br></div><div><div>Université de Toulouse - Bât. 4R3B1</div><div>118, route de Narbonne - 31062 Toulouse</div>
</div></div></div></div></div>
<br><br></div><div><div class="h5"><div class="gmail_quote">On Wed, Nov 13, 2013 at 6:23 PM, Hadrien Mary <span dir="ltr"><<a href="mailto:hadrien.mary@gmail.com" target="_blank">hadrien.mary@gmail.com</a>></span> wrote:<br>
<blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex">
<div dir="ltr">Hi, <div><br></div><div>I didn't find in OME specification a way to specify contrast and display settings in OME. So when I open an OME Tiff in Fiji with LOCI I don't have to manually open Image > Adjust > Brightness/Contrast and click auto to be able to correctly view my images.</div>
<div><br></div><div>If there is a way, tell me and I will ask to MM developpers to add it in their OME implementation. If OME does not support that, what do you think about including it ? Do it make sense to you ?</div><div>
<br></div><div>Best,<br clear="all"><div><div dir="ltr"><br>--<br>Hadrien Mary<div><br></div><div>Ph.D student in Biology</div><div>Tournier-Gachet Team</div><div>CNRS - LBCMCP - UMR 5088<div><div><br></div><div><div>Université de Toulouse - Bât. 4R3B1</div>
<div>118, route de Narbonne - 31062 Toulouse</div></div></div></div></div></div>
</div></div>
</blockquote></div><br></div></div></div>
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