[ome-devel] webemdb timeout
Ingvar Lagerstedt
ingvar at ebi.ac.uk
Tue Apr 24 17:49:48 BST 2012
Will,
Yes that looks like the right timeout.
Cheers,
Ingvar
> Will and Ola,
>
> I have modified sessions timeout so now (debug has been on all the time)
> bin/omero config get:
>
> omero.data.dir=/var/OMERO
> omero.db.name=EMDBslice
> omero.db.pass=.lo9,ki8
> omero.db.user=omero
> omero.sessions.timeout=3600000
> omero.web.admins=["Ingvar", "ingvar at ebi.ac.uk"]
> omero.web.application_host=http://172.22.100.213:80/
> omero.web.application_server=fastcgi-tcp
> omero.web.debug=True
> omero.web.email_subject_prefix=OMERO EMDB testdb
> omero.web.emdb_public_password=emdb
> omero.web.emdb_public_username=emdb
> omero.web.server_email=ingvar at ebi.ac.uk
>
> I will check if the timeout pattern changes.
>
> Log files attached as a tar ball
>
> Thanks,
> Ingvar
>
>> Hi Ingvar,
>>
>> Just to be sure if the '10 minutes' is due to omero session timeout, you
>> could change this with
>> E.g
>>
>> $ bin/omero config set omero.sessions.timeout 3600000 # timeout in
>> millisecs!
>>
>> You'll need to do
>> $ bin/omero admin restart
>>
>> and check that this varies your Apache timeout.
>> Then at least we know for sure that it's the same 10 mins, not a
>> coincidence.
>>
>> Will
>>
>>
>>
>> On 24 Apr 2012, at 16:37, Aleksandra Tarkowska wrote:
>>
>>> Hi Ingvar
>>>
>>> Could you please send us log files from omero/dist/var/log,
>>> as well as your omero apache config file and output of bin/omero config
>>> get.
>>>
>>> Could you please make sure you have web debugging on via:
>>>
>>> bin/omero config get
>>> and check if omero.web.debug is True
>>>
>>> if not please set by:
>>> bin/omero config set omero.web.debug True
>>>
>>> Thanks
>>>
>>> Kind regards
>>> Aleksandra
>>>
>>> Aleksandra Tarkowska, M.Sc, Engg.
>>> Software Engineer
>>> Open Microscopy Environment
>>> http://www.openmicroscopy.org
>>>
>>>
>>> On 24 Apr 2012, at 16:21, Ingvar Lagerstedt wrote:
>>>
>>>> Hello,
>>>>
>>>> I am trying to use the webemdb interface with Apache on an RHEL6WS
>>>> box.
>>>> I
>>>> can access the pages fine as long as there is a valid session, but as
>>>> soon
>>>> as the session ends I get an AttributeError. If I at that point
>>>> connect
>>>> to the WebClient, I can then access webemdb for another 10 min.
>>>> I do not see this behaviour when using the development server on a
>>>> Mac,
>>>> so
>>>> suspect that this is down to either some security feature of RHEL6WS
>>>> or
>>>> Apache, or just some Apache settings that I am unfamiliar with. Any
>>>> suggestions appreciated.
>>>>
>>>> The error message is attached, and the output from
>>>> bin/omero admin diagnostics
>>>> is given below
>>>>
>>>>
>>>> ================================================================================
>>>> OMERO Diagnostics OMERO4.3.3
>>>> ================================================================================
>>>>
>>>> WARNING:omero.util.UpgradeCheck:UPGRADE AVAILABLE:Please upgrade to
>>>> Beta-4.3.4 See http://trac.openmicroscopy.org.uk/omero for the latest
>>>> version
>>>>
>>>> Commands: java -version 1.6.0 (/usr/bin/java)
>>>> Commands: python -V 2.6.6 (/usr/bin/python)
>>>> Commands: icegridnode --version 3.4.2
>>>> (/usr/bin/icegridnode)
>>>> Commands: icegridadmin --version 3.4.2
>>>> (/usr/bin/icegridadmin)
>>>> Commands: psql --version 8.4.9 (/usr/bin/psql)
>>>>
>>>> Server: icegridnode running
>>>> Server: Blitz-0 active (pid = 3200,
>>>> enabled)
>>>> Server: DropBox active (pid = 3218,
>>>> enabled)
>>>> Server: FileServer active (pid = 3244,
>>>> enabled)
>>>> Server: Indexer-0 active (pid = 3220,
>>>> enabled)
>>>> Server: MonitorServer active (pid = 3243,
>>>> enabled)
>>>> Server: OMERO.Glacier2 active (pid = 3222,
>>>> enabled)
>>>> Server: OMERO.IceStorm active (pid = 3245,
>>>> enabled)
>>>> Server: PixelData-0 active (pid = 3246,
>>>> enabled)
>>>> Server: Processor-0 active (pid = 3251,
>>>> enabled)
>>>> Server: Tables-0 inactive (disabled)
>>>> Server: TestDropBox inactive (enabled)
>>>>
>>>> Log dir: /var/www/html/omero/dist/var/log exists
>>>>
>>>> Log files: Blitz-0.log 139.0 MB errors=8
>>>> warnings=77
>>>> Log files: DropBox.log 22.0 KB errors=2
>>>> warnings=8
>>>> Log files: FileServer.log 2.0 KB
>>>> Log files: Indexer-0.log 218.0 KB errors=16
>>>> warnings=20
>>>> Log files: MonitorServer.log 11.0 KB
>>>> Log files: OMEROweb.log 3.0 MB errors=39
>>>> warnings=59
>>>> Log files: OMEROweb_request.log 1.0 KB errors=0
>>>> warnings=13
>>>> Log files: PixelData-0.log 133.0 KB errors=18
>>>> warnings=30
>>>> Log files: Processor-0.log 30.0 KB errors=5
>>>> warnings=16
>>>> Log files: Tables-0.log n/a
>>>> Log files: TestDropBox.log n/a
>>>> Log files: master.err 7.0 KB
>>>> Log files: master.out 0.0 KB
>>>> Log files: Total size 143.05 MB
>>>>
>>>> Parsing Blitz-0.log:[line:410] => Server restarted <=
>>>> Parsing Blitz-0.log:[line:623855] => Server restarted <=
>>>> Parsing Blitz-0.log:[line:872912] Your postgres hostname and/or port
>>>> is
>>>> invalid
>>>> Parsing Blitz-0.log:[line:873012] => Server restarted <=
>>>> Parsing Blitz-0.log:[line:873506] => Server restarted <=
>>>>
>>>> Environment:OMERO_HOME=/var/www/html/omero/dist
>>>> Environment:OMERO_NODE=(unset)
>>>> Environment:OMERO_MASTER=(unset)
>>>> Environment:PATH=/usr/lib64/qt-3.3/bin:/usr/local/bin:/usr/bin:/bin:/usr/local/sbin:/usr/sbin:/sbin:/home/ingvar/bin
>>>> Environment:ICE_HOME=/usr
>>>> Environment:LD_LIBRARY_PATH=(unset)
>>>> Environment:DYLD_LIBRARY_PATH=(unset)
>>>>
>>>> OMERO data dir: '/var/OMERO'
>>>> Exists? True Is writable? True
>>>> OMERO.web status... [RUNNING] (PID 3474)
>>>>
>>>> The postgres error in Blitz-log happened when I got a new IP-address,
>>>> and
>>>> should not be relevant here. The problem describe was seen both
>>>> before
>>>> and after that event.
>>>>
>>>>
>>>> Let me know if there are any further details that may be useful.
>>>> /Ingvar
>>>>
>>>> ---
>>>> Ingvar Lagerstedt, PDBe - EMBL/EBI, A2-24
>>>> Hinxton, Cambridge CB10 1SD, UK
>>>> <webemdb_timeout.error>_______________________________________________
>>>> ome-devel mailing list
>>>> ome-devel at lists.openmicroscopy.org.uk
>>>> http://lists.openmicroscopy.org.uk/mailman/listinfo/ome-devel
>>>
>>>
>>> The University of Dundee is a registered Scottish Charity, No: SC015096
>>> _______________________________________________
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>>> ome-devel at lists.openmicroscopy.org.uk
>>> http://lists.openmicroscopy.org.uk/mailman/listinfo/ome-devel
>>
>>
>
>
> ---
> Ingvar Lagerstedt, PDBe - EMBL/EBI, A2-24
> Hinxton, Cambridge CB10 1SD, UK
>
---
Ingvar Lagerstedt, PDBe - EMBL/EBI, A2-24
Hinxton, Cambridge CB10 1SD, UK
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