[ome-devel] webemdb timeout
Ingvar Lagerstedt
ingvar at ebi.ac.uk
Tue Apr 24 16:56:06 BST 2012
Will and Ola,
I have modified sessions timeout so now (debug has been on all the time)
bin/omero config get:
omero.data.dir=/var/OMERO
omero.db.name=EMDBslice
omero.db.pass=.lo9,ki8
omero.db.user=omero
omero.sessions.timeout=3600000
omero.web.admins=["Ingvar", "ingvar at ebi.ac.uk"]
omero.web.application_host=http://172.22.100.213:80/
omero.web.application_server=fastcgi-tcp
omero.web.debug=True
omero.web.email_subject_prefix=OMERO EMDB testdb
omero.web.emdb_public_password=emdb
omero.web.emdb_public_username=emdb
omero.web.server_email=ingvar at ebi.ac.uk
I will check if the timeout pattern changes.
Log files attached as a tar ball
Thanks,
Ingvar
> Hi Ingvar,
>
> Just to be sure if the '10 minutes' is due to omero session timeout, you
> could change this with
> E.g
>
> $ bin/omero config set omero.sessions.timeout 3600000 # timeout in
> millisecs!
>
> You'll need to do
> $ bin/omero admin restart
>
> and check that this varies your Apache timeout.
> Then at least we know for sure that it's the same 10 mins, not a
> coincidence.
>
> Will
>
>
>
> On 24 Apr 2012, at 16:37, Aleksandra Tarkowska wrote:
>
>> Hi Ingvar
>>
>> Could you please send us log files from omero/dist/var/log,
>> as well as your omero apache config file and output of bin/omero config
>> get.
>>
>> Could you please make sure you have web debugging on via:
>>
>> bin/omero config get
>> and check if omero.web.debug is True
>>
>> if not please set by:
>> bin/omero config set omero.web.debug True
>>
>> Thanks
>>
>> Kind regards
>> Aleksandra
>>
>> Aleksandra Tarkowska, M.Sc, Engg.
>> Software Engineer
>> Open Microscopy Environment
>> http://www.openmicroscopy.org
>>
>>
>> On 24 Apr 2012, at 16:21, Ingvar Lagerstedt wrote:
>>
>>> Hello,
>>>
>>> I am trying to use the webemdb interface with Apache on an RHEL6WS box.
>>> I
>>> can access the pages fine as long as there is a valid session, but as
>>> soon
>>> as the session ends I get an AttributeError. If I at that point
>>> connect
>>> to the WebClient, I can then access webemdb for another 10 min.
>>> I do not see this behaviour when using the development server on a Mac,
>>> so
>>> suspect that this is down to either some security feature of RHEL6WS or
>>> Apache, or just some Apache settings that I am unfamiliar with. Any
>>> suggestions appreciated.
>>>
>>> The error message is attached, and the output from
>>> bin/omero admin diagnostics
>>> is given below
>>>
>>>
>>> ================================================================================
>>> OMERO Diagnostics OMERO4.3.3
>>> ================================================================================
>>>
>>> WARNING:omero.util.UpgradeCheck:UPGRADE AVAILABLE:Please upgrade to
>>> Beta-4.3.4 See http://trac.openmicroscopy.org.uk/omero for the latest
>>> version
>>>
>>> Commands: java -version 1.6.0 (/usr/bin/java)
>>> Commands: python -V 2.6.6 (/usr/bin/python)
>>> Commands: icegridnode --version 3.4.2
>>> (/usr/bin/icegridnode)
>>> Commands: icegridadmin --version 3.4.2
>>> (/usr/bin/icegridadmin)
>>> Commands: psql --version 8.4.9 (/usr/bin/psql)
>>>
>>> Server: icegridnode running
>>> Server: Blitz-0 active (pid = 3200, enabled)
>>> Server: DropBox active (pid = 3218, enabled)
>>> Server: FileServer active (pid = 3244, enabled)
>>> Server: Indexer-0 active (pid = 3220, enabled)
>>> Server: MonitorServer active (pid = 3243, enabled)
>>> Server: OMERO.Glacier2 active (pid = 3222, enabled)
>>> Server: OMERO.IceStorm active (pid = 3245, enabled)
>>> Server: PixelData-0 active (pid = 3246, enabled)
>>> Server: Processor-0 active (pid = 3251, enabled)
>>> Server: Tables-0 inactive (disabled)
>>> Server: TestDropBox inactive (enabled)
>>>
>>> Log dir: /var/www/html/omero/dist/var/log exists
>>>
>>> Log files: Blitz-0.log 139.0 MB errors=8
>>> warnings=77
>>> Log files: DropBox.log 22.0 KB errors=2
>>> warnings=8
>>> Log files: FileServer.log 2.0 KB
>>> Log files: Indexer-0.log 218.0 KB errors=16
>>> warnings=20
>>> Log files: MonitorServer.log 11.0 KB
>>> Log files: OMEROweb.log 3.0 MB errors=39
>>> warnings=59
>>> Log files: OMEROweb_request.log 1.0 KB errors=0
>>> warnings=13
>>> Log files: PixelData-0.log 133.0 KB errors=18
>>> warnings=30
>>> Log files: Processor-0.log 30.0 KB errors=5
>>> warnings=16
>>> Log files: Tables-0.log n/a
>>> Log files: TestDropBox.log n/a
>>> Log files: master.err 7.0 KB
>>> Log files: master.out 0.0 KB
>>> Log files: Total size 143.05 MB
>>>
>>> Parsing Blitz-0.log:[line:410] => Server restarted <=
>>> Parsing Blitz-0.log:[line:623855] => Server restarted <=
>>> Parsing Blitz-0.log:[line:872912] Your postgres hostname and/or port is
>>> invalid
>>> Parsing Blitz-0.log:[line:873012] => Server restarted <=
>>> Parsing Blitz-0.log:[line:873506] => Server restarted <=
>>>
>>> Environment:OMERO_HOME=/var/www/html/omero/dist
>>> Environment:OMERO_NODE=(unset)
>>> Environment:OMERO_MASTER=(unset)
>>> Environment:PATH=/usr/lib64/qt-3.3/bin:/usr/local/bin:/usr/bin:/bin:/usr/local/sbin:/usr/sbin:/sbin:/home/ingvar/bin
>>> Environment:ICE_HOME=/usr
>>> Environment:LD_LIBRARY_PATH=(unset)
>>> Environment:DYLD_LIBRARY_PATH=(unset)
>>>
>>> OMERO data dir: '/var/OMERO'
>>> Exists? True Is writable? True
>>> OMERO.web status... [RUNNING] (PID 3474)
>>>
>>> The postgres error in Blitz-log happened when I got a new IP-address,
>>> and
>>> should not be relevant here. The problem describe was seen both before
>>> and after that event.
>>>
>>>
>>> Let me know if there are any further details that may be useful.
>>> /Ingvar
>>>
>>> ---
>>> Ingvar Lagerstedt, PDBe - EMBL/EBI, A2-24
>>> Hinxton, Cambridge CB10 1SD, UK
>>> <webemdb_timeout.error>_______________________________________________
>>> ome-devel mailing list
>>> ome-devel at lists.openmicroscopy.org.uk
>>> http://lists.openmicroscopy.org.uk/mailman/listinfo/ome-devel
>>
>>
>> The University of Dundee is a registered Scottish Charity, No: SC015096
>> _______________________________________________
>> ome-devel mailing list
>> ome-devel at lists.openmicroscopy.org.uk
>> http://lists.openmicroscopy.org.uk/mailman/listinfo/ome-devel
>
>
---
Ingvar Lagerstedt, PDBe - EMBL/EBI, A2-24
Hinxton, Cambridge CB10 1SD, UK
-------------- next part --------------
A non-text attachment was scrubbed...
Name: ingvarWebEmdb.tgz
Type: application/x-compressed-tar
Size: 7274405 bytes
Desc: not available
URL: <http://lists.openmicroscopy.org.uk/pipermail/ome-devel/attachments/20120424/e1331e4d/attachment-0001.bin>
More information about the ome-devel
mailing list