[ome-devel] Zeiss 710

[Will Moore]

Hi Ruben,

On 30 Sep 2010, at 10:38, Rubén Muñoz wrote:
>
> I have asked the author of these images. She produced the data using  
> a Zeiss macro that actually doesn't perform series, but many  
> different single images, renamed independently.
> I have nothing to add to this thread. It is not an issue. Never mind  
> about that dataset, I am not sure how I will convert them, but  
> bioformats should not do it directly.
>
> However... Can one add the corresponding independent series to one  
> OME.TIF file creating a new multiT set?
>

There is a script in OMERO to stitch multiple images into a single  
image with more dimensions (which you could then export). This would  
duplicate the data. See:
http://cvs.openmicroscopy.org.uk/snapshots/movies/omero-4-2/mov/Scripting1.mov
The script has evolved a bit since then to auto recognise images by  
name. See:
http://trac.openmicroscopy.org.uk/shoola/wiki/UtilScripts#CombineImages

You could edit the script itself to tailor it to your requirements if  
necessary.

I believe similar functionality exists in ImageJ but don't know the  
details?

   Cheers,

     Will.


> Thanks for the discussion.
>
> Rubén
>
>
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William Moore
Wellcome Trust Centre for Gene Regulation & Expression
College of Life Sciences
MSI/WTB/JBC Complex
University of Dundee
Dow Street
Dundee  DD1 5EH
United Kingdom

Phone 01382 386364
http://openmicroscopy.org.uk