[ome-devel] Zeiss 710

[Curtis Rueden]

Hi Rubén,

I believe similar functionality exists in ImageJ but don't know the details?
>

In ImageJ, you can use the Bio-Formats Importer with the "Concatenate series
when compatible" option to stitch together the 48 series, as long as they
all have the same dimensional extents.

-Curtis

On Thu, Sep 30, 2010 at 5:22 AM, Will Moore <will at lifesci.dundee.ac.uk>wrote:

> Hi Ruben,
>
>
> On 30 Sep 2010, at 10:38, Rubén Muñoz wrote:
>
>>
>> I have asked the author of these images. She produced the data using a
>> Zeiss macro that actually doesn't perform series, but many different single
>> images, renamed independently.
>> I have nothing to add to this thread. It is not an issue. Never mind about
>> that dataset, I am not sure how I will convert them, but bioformats should
>> not do it directly.
>>
>> However... Can one add the corresponding independent series to one OME.TIF
>> file creating a new multiT set?
>>
>>
> There is a script in OMERO to stitch multiple images into a single image
> with more dimensions (which you could then export). This would duplicate the
> data. See:
>
> http://cvs.openmicroscopy.org.uk/snapshots/movies/omero-4-2/mov/Scripting1.mov
> The script has evolved a bit since then to auto recognise images by name.
> See:
> http://trac.openmicroscopy.org.uk/shoola/wiki/UtilScripts#CombineImages
>
> You could edit the script itself to tailor it to your requirements if
> necessary.
>
> I believe similar functionality exists in ImageJ but don't know the
> details?
>
>  Cheers,
>
>    Will.
>
>
>  Thanks for the discussion.
>>
>> Rubén
>>
>>
>> _______________________________________________
>> ome-devel mailing list
>> ome-devel at lists.openmicroscopy.org.uk
>> http://lists.openmicroscopy.org.uk/mailman/listinfo/ome-devel
>>
>
> William Moore
> Wellcome Trust Centre for Gene Regulation & Expression
> College of Life Sciences
> MSI/WTB/JBC Complex
> University of Dundee
> Dow Street
> Dundee  DD1 5EH
> United Kingdom
>
> Phone 01382 386364
> http://openmicroscopy.org.uk
>
>
>
>
>
> _______________________________________________
> ome-devel mailing list
> ome-devel at lists.openmicroscopy.org.uk
> http://lists.openmicroscopy.org.uk/mailman/listinfo/ome-devel
>
-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://lists.openmicroscopy.org.uk/pipermail/ome-devel/attachments/20100930/7f1bb38d/attachment.html>