[ome-devel] import into Omero server fails

[Peter Schregle]

Hello Andrew,

thanks for your answer. 

I understand it partly, only. If the max_sample... does create an error
because the image data is missing, why does the min_sample... import
properly? It doesn't have image data either.

The real problem is not the max_sample, but other files created by a TILL
microscope that currently cannot be imported. I've uploaded these images
from the OMERO importer in the last hour.

I've looked into the max_sample in order to find out if there might be
problems in the metadata section of the TILL files, but because of the
loading errors I was led to believe that the problem is not in the TILL
files but in the OME importer.

However, your pointer to the sample files in
http://www.ome-xml.org/browser/Documentation/Samples/OmeFiles is very
helpful, I will look into these.

Best regards
Peter

> -----Ursprüngliche Nachricht-----
> Von: Andrew Patterson [mailto:ajpatterson at lifesci.dundee.ac.uk]
> Gesendet: Mittwoch, 15. September 2010 13:16
> An: Peter Schregle
> Cc: ome-devel at lists.openmicroscopy.org.uk
> Betreff: Re: [ome-devel] import into Omero server fails
> 
> Hello Peter,
> 
> The file max-sample-2008-02.ome is not real data. It and min-sample-2008-
> 02.ome were created to show the XML structure that an ome file can have.
> 
> If you open max-sample-2008-02.ome in a text editor you will see the
matadata
> side of the file has been "maxed out", that is it has at "least one" of
everything
> possible, but has no real image data in it.
> 
> I created them to go with an old documentation page, now removed.
> 
> If you want files that should import fine look in the sub-folder of
samples:
> http://www.ome-xml.org/browser/Documentation/Samples/OmeFiles
> 
> I will move the other files into a new folder and add a note describing
there
> purpose.
> 
> Hope this helps,
> 
> Andrew
> 
> On 15 Sep 2010, at 10:52, Peter Schregle wrote:
> 
> > Hi,
> >
> > we are having problems with the OME import functionality.
> >
> > We tried to import the max-sample-2008-02.ome (which we downloaded
> somewhere on the OME site as giving a real-world example of an OME file),
but
> we got an error message. The trivial-sized min-sample
 worked.
> >
> > There seems to be a serious problem with import. Can you help somehow?
Or
> provide some contact to someone who can help?
> >
> > Thanks and best regards
> >
> > Peter
> > _______________________________________________
> > ome-devel mailing list
> > ome-devel at lists.openmicroscopy.org.uk
> > http://lists.openmicroscopy.org.uk/mailman/listinfo/ome-devel