[ome-devel] importer questions

[Josh Moore]

Oliver,

we tracked down the setArchiveImage problem, which got written up as:

 http://trac.openmicroscopy.org.uk/omero/ticket/2623

which is now fixed on the Beta4.2 branch as well as trunk. If you are using ImportCandidates as well as ImportConfig and ImportLibrary, then archiving should work as expected.

Cheers,
~Josh

On Jul 26, 2010, at 1:57 PM, Josh Moore wrote:

> 
> On Jul 26, 2010, at 1:54 PM, Oliver Müller wrote:
> 
>> Hi Josh,
>> 
>> first: thank you for turning my question into a ticket ;-)
>> Jean-Marie also did that (for another question) - you guys are doing a great job; I really like "the OMERO spirit" ;-)
> 
> Glad to hear it. We do, too!
> 
>>>> config.hostname.set(serverIP);
>>>> config.username.set(username);
>>>> config.password.set(password);
>>>> config.port.set(Integer.parseInt(serverPort));
>>>> config.setArchiveImage(archive);
>>>> 
>>>> where the last action (archive) does not show any effect (I don't know why)
>>> 
>>> Could you give us some more information about what's going wrong and for what type of file?
>> 
>> 
>> I tried to archive a .tif file - maybe it did'nt have any effect due to this specific file type?
>> It may take some time until I can send you more information, since I will leave Homburg on Wednessday to start my new job at Saarbruecken (after a couple of days off). But since I plan to continue ATOM (and to establish OMERO in the new group ;-) ),  you will definitely hear from me ;-)
> 
> No problem. When you get a chance, more information would help. But we'll see if we can track down the problem before then.
> 
> Best wishes with the new job!
> ~Josh.
> 
>> Greetings from Homburg,
>> -olli-
>> 
>> 
>>>> - the rest works. To assign an existing dataset, I did						
>>>> // import images into an existing ATOM / dataset (ID)
>>>> config.targetClass.set(Dataset.class.getName());
>>>> config.targetId.set(Long.parseLong(dataset));
>>>> 
>>>> My final questions:
>>>> - Why do I have to address my dataset by its ID? Can it be also a string "dataset_name"? (see next question)
>>>> - Is it possible to implement something like "config.dataset.set("dataset_name")" and "config.project.set("my_projectname")"?
>>>> This would be a nice and consistent interface ;-)
>>> 
>>> I've added this as a feature request:
>>> http://trac.openmicroscopy.org.uk/omero/ticket/2620
>>> 
>>> Thanks for the suggestion.
>>> ~Josh.
>>> 
>>>> Best regards,
>>>> -olli-
>>>> 
>>>> 
>>>> Am 17.06.2010 um 08:35 schrieb Josh Moore:
>>>> 
>>>>> On 6/16/10 10:20 AM, Oliver Müller wrote:
>>>>>> Hi Josh,
>>>>>> 
>>>>>> sorry, I asked you yesterday, but I cannot remember: can you tell me, where the library.setDataset() can now be found?
>>>>>> The second question was: what are the minimum Java-Imports I have to do to make ATOM ready to go? (currently I use the entire OMERO trunc :-) ).
>>>>>> 
>>>>>> Thank you,
>>>>>> -olli-
>>>>> :) From ome.formats.importer.cli.CommandLineImporter which you might want to subclass or re-use otherwise:
>>>>> 
>>>>> 
>>>>> public static void main(String[] args) {
>>>>> 
>>>>>    ImportConfig config = new ImportConfig();
>>>>> 
>>>>>    // Defaults
>>>>>    config.email.set("");
>>>>>    config.sendFiles.set(false);
>>>>>    config.sendLogFile.set(false);
>>>>> ...
>>>>> 
>>>>>    while ((a = g.getopt()) != -1) {
>>>>>        switch (a) {
>>>>>        case 1: {
>>>>> ...
>>>>>        case 'd': {
>>>>>            config.targetClass.set(Dataset.class.getName());
>>>>>            config.targetId.set(Long.parseLong(g.getOptarg()));
>>>>>            break;
>>>>>        }
>>>>> ...
>>>>> 
>>>>> Hope that helps. ~J.
>>>> 
>>>> 
>>> 
>> 
>> ---
>> Oliver Müller
>> Institut für Molekulare Zellbiologie
>> Medizinische Fakultät
>> Universität des Saarlandes
>> Gebäude 61 - FR 2.1 - Anatomie & Zellbiologie
>> D-66421 Homburg/Saar
>> Tel.: + 49 (0) 6841 162 61 09
>> Fax.: + 49 (0) 6841 162 61 04
>> Web : www.lipplab.de
>> 
>> 
>> 
>