[ome-devel] importer questions

[Josh Moore]

On Jul 26, 2010, at 1:54 PM, Oliver Müller wrote:

> Hi Josh,
> 
> first: thank you for turning my question into a ticket ;-)
> Jean-Marie also did that (for another question) - you guys are doing a great job; I really like "the OMERO spirit" ;-)

Glad to hear it. We do, too!

>>> config.hostname.set(serverIP);
>>> config.username.set(username);
>>> config.password.set(password);
>>> config.port.set(Integer.parseInt(serverPort));
>>> config.setArchiveImage(archive);
>>> 
>>> where the last action (archive) does not show any effect (I don't know why)
>> 
>> Could you give us some more information about what's going wrong and for what type of file?
> 
> 
> I tried to archive a .tif file - maybe it did'nt have any effect due to this specific file type?
> It may take some time until I can send you more information, since I will leave Homburg on Wednessday to start my new job at Saarbruecken (after a couple of days off). But since I plan to continue ATOM (and to establish OMERO in the new group ;-) ),  you will definitely hear from me ;-)

No problem. When you get a chance, more information would help. But we'll see if we can track down the problem before then.

Best wishes with the new job!
~Josh.

> Greetings from Homburg,
> -olli-
> 
> 
>>> - the rest works. To assign an existing dataset, I did						
>>> // import images into an existing ATOM / dataset (ID)
>>> config.targetClass.set(Dataset.class.getName());
>>> config.targetId.set(Long.parseLong(dataset));
>>> 
>>> My final questions:
>>> - Why do I have to address my dataset by its ID? Can it be also a string "dataset_name"? (see next question)
>>> - Is it possible to implement something like "config.dataset.set("dataset_name")" and "config.project.set("my_projectname")"?
>>> This would be a nice and consistent interface ;-)
>> 
>> I've added this as a feature request:
>> http://trac.openmicroscopy.org.uk/omero/ticket/2620
>> 
>> Thanks for the suggestion.
>> ~Josh.
>> 
>>> Best regards,
>>> -olli-
>>> 
>>> 
>>> Am 17.06.2010 um 08:35 schrieb Josh Moore:
>>> 
>>>> On 6/16/10 10:20 AM, Oliver Müller wrote:
>>>>> Hi Josh,
>>>>> 
>>>>> sorry, I asked you yesterday, but I cannot remember: can you tell me, where the library.setDataset() can now be found?
>>>>> The second question was: what are the minimum Java-Imports I have to do to make ATOM ready to go? (currently I use the entire OMERO trunc :-) ).
>>>>> 
>>>>> Thank you,
>>>>> -olli-
>>>> :) From ome.formats.importer.cli.CommandLineImporter which you might want to subclass or re-use otherwise:
>>>> 
>>>> 
>>>> public static void main(String[] args) {
>>>> 
>>>>     ImportConfig config = new ImportConfig();
>>>> 
>>>>     // Defaults
>>>>     config.email.set("");
>>>>     config.sendFiles.set(false);
>>>>     config.sendLogFile.set(false);
>>>> ...
>>>> 
>>>>     while ((a = g.getopt()) != -1) {
>>>>         switch (a) {
>>>>         case 1: {
>>>> ...
>>>>         case 'd': {
>>>>             config.targetClass.set(Dataset.class.getName());
>>>>             config.targetId.set(Long.parseLong(g.getOptarg()));
>>>>             break;
>>>>         }
>>>> ...
>>>> 
>>>> Hope that helps. ~J.
>>> 
>>> 
>> 
> 
> ---
> Oliver Müller
> Institut für Molekulare Zellbiologie
> Medizinische Fakultät
> Universität des Saarlandes
> Gebäude 61 - FR 2.1 - Anatomie & Zellbiologie
> D-66421 Homburg/Saar
> Tel.: + 49 (0) 6841 162 61 09
> Fax.: + 49 (0) 6841 162 61 04
> Web : www.lipplab.de
> 
> 
>