[ome-devel] Server crash
cihan cetin
cetin at embl.de
Thu Aug 9 09:33:59 BST 2007
Hi Jason,
I imported 16bits tiff images, it was fine, but then in the insight tool
I just clicked on one of the pictures and the server crashed immediately.
I copy/paste the output of the server.
=========================================================================
JBoss Bootstrap Environment
JBOSS_HOME: /home/cihan/omero-3.0-Beta2/jboss-4.0.4.GA
JAVA: /usr/jdk1.6.0_02/bin/java
JAVA_OPTS: -server -Xms128m -Xmx512m
-Dsun.rmi.dgc.client.gcInterval=3600000
-Dsun.rmi.dgc.server.gcInterval=3600000 -Dprogram.name=run.sh
CLASSPATH:
/home/cihan/omero-3.0-Beta2/jboss-4.0.4.GA/bin/run.jar:/usr/jdk1.6.0_02/lib/tools.jar
=========================================================================
10:25:57,591 INFO [Server] Starting JBoss (MX MicroKernel)...
10:25:57,593 INFO [Server] Release ID: JBoss [Zion] 4.0.4.GA (build:
CVSTag=JBoss_4_0_4_GA date=200605151000)
10:25:57,633 INFO [Server] Home Dir:
/home/cihan/omero-3.0-Beta2/jboss-4.0.4.GA
10:25:57,634 INFO [Server] Home URL:
file:/home/cihan/omero-3.0-Beta2/jboss-4.0.4.GA/
10:25:57,636 INFO [Server] Patch URL: null
10:25:57,636 INFO [Server] Server Name: default
10:25:57,636 INFO [Server] Server Home Dir:
/home/cihan/omero-3.0-Beta2/jboss-4.0.4.GA/server/default
10:25:57,637 INFO [Server] Server Home URL:
file:/home/cihan/omero-3.0-Beta2/jboss-4.0.4.GA/server/default/
10:25:57,637 INFO [Server] Server Log Dir:
/home/cihan/omero-3.0-Beta2/jboss-4.0.4.GA/server/default/log
10:25:57,638 INFO [Server] Server Temp Dir:
/home/cihan/omero-3.0-Beta2/jboss-4.0.4.GA/server/default/tmp
10:25:57,639 INFO [Server] Root Deployment Filename: jboss-service.xml
10:25:58,560 INFO [ServerInfo] Java version: 1.6.0_02,Sun Microsystems Inc.
10:25:58,561 INFO [ServerInfo] Java VM: Java HotSpot(TM) Server VM
1.6.0_02-b05,Sun Microsystems Inc.
10:25:58,561 INFO [ServerInfo] OS-System: Linux 2.6.18-8.1.8.el5,i386
10:25:59,959 INFO [Server] Core system initialized
10:26:02,635 INFO [Log4jService$URLWatchTimerTask] Configuring from
URL: resource:log4j.xml
10:26:06,011 INFO [SocketServerInvoker] Invoker started for locator:
InvokerLocator [socket://10.1.105.8:3873/]
10:26:06,889 INFO [AspectDeployer] Deployed AOP:
file:/home/cihan/omero-3.0-Beta2/jboss-4.0.4.GA/server/default/deploy/ejb3-interceptors-aop.xml
10:26:10,672 INFO [WebService] Using RMI server codebase:
http://pc-pepperkok98:8083/
10:26:15,449 INFO [MailService] Mail Service bound to java:/Mail
10:26:16,764 INFO [NamingService] JNDI bootstrap JNP=/0.0.0.0:1099,
RMI=/0.0.0.0:1098, backlog=50, no client SocketFactory, Server
SocketFactory=class org.jboss.net.sockets.DefaultSocketFactory
10:26:16,803 INFO [SubscriptionManager] Bound event dispatcher to
java:/EventDispatcher
10:26:17,917 INFO [Embedded] Catalina naming disabled
10:26:18,044 INFO [ClusterRuleSetFactory] Unable to find a cluster rule
set in the classpath. Will load the default rule set.
10:26:18,047 INFO [ClusterRuleSetFactory] Unable to find a cluster rule
set in the classpath. Will load the default rule set.
10:26:18,688 INFO [Http11BaseProtocol] Initializing Coyote HTTP/1.1 on
http-0.0.0.0-8080
10:26:18,691 INFO [Catalina] Initialization processed in 643 ms
10:26:18,692 INFO [StandardService] Starting service jboss.web
10:26:18,699 INFO [StandardEngine] Starting Servlet Engine: Apache
Tomcat/5.5.17
10:26:19,084 INFO [StandardHost] XML validation disabled
10:26:19,115 INFO [Catalina] Server startup in 423 ms
10:26:19,466 INFO [TomcatDeployer] deploy, ctxPath=/,
warUrl=.../deploy/jbossweb-tomcat55.sar/ROOT.war/
10:26:20,099 INFO [WebappLoader] Dual registration of jndi stream
handler: factory already defined
10:26:20,779 INFO [TomcatDeployer] deploy, ctxPath=/jbossws,
warUrl=.../tmp/deploy/tmp57693jbossws-exp.war/
10:26:21,541 INFO [RARDeployment] Required license terms exist, view
META-INF/ra.xml in .../deploy/jboss-local-jdbc.rar
10:26:21,971 INFO [RARDeployment] Required license terms exist, view
META-INF/ra.xml in .../deploy/jms/jms-ra.rar
10:26:22,025 INFO [RARDeployment] Required license terms exist, view
META-INF/ra.xml in .../deploy/quartz-ra.rar
10:26:22,045 INFO [QuartzResourceAdapter] start quartz!!!
10:26:22,174 INFO [SimpleThreadPool] Job execution threads will use
class loader of thread: main
10:26:22,226 INFO [QuartzScheduler] Quartz Scheduler v.1.5.2 created.
10:26:22,231 INFO [RAMJobStore] RAMJobStore initialized.
10:26:22,232 INFO [StdSchedulerFactory] Quartz scheduler
'DefaultQuartzScheduler' initialized from default resource file in
Quartz package: 'quartz.properties'
10:26:22,233 INFO [StdSchedulerFactory] Quartz scheduler version: 1.5.2
10:26:22,233 INFO [QuartzScheduler] Scheduler
DefaultQuartzScheduler_$_NON_CLUSTERED started.
10:26:23,887 INFO [ConnectionFactoryBindingService] Bound
ConnectionManager 'jboss.jca:service=DataSourceBinding,name=DefaultDS'
to JNDI name 'java:DefaultDS'
10:26:24,328 INFO [A] Bound to JNDI name: queue/A
10:26:24,333 INFO [B] Bound to JNDI name: queue/B
10:26:24,337 INFO [C] Bound to JNDI name: queue/C
10:26:24,340 INFO [D] Bound to JNDI name: queue/D
10:26:24,344 INFO [ex] Bound to JNDI name: queue/ex
10:26:24,384 INFO [testTopic] Bound to JNDI name: topic/testTopic
10:26:24,389 INFO [securedTopic] Bound to JNDI name: topic/securedTopic
10:26:24,392 INFO [testDurableTopic] Bound to JNDI name:
topic/testDurableTopic
10:26:24,399 INFO [testQueue] Bound to JNDI name: queue/testQueue
10:26:24,437 INFO [UILServerILService] JBossMQ UIL service available at
: /0.0.0.0:8093
10:26:24,558 INFO [DLQ] Bound to JNDI name: queue/DLQ
10:26:24,818 INFO [ConnectionFactoryBindingService] Bound
ConnectionManager
'jboss.jca:service=ConnectionFactoryBinding,name=JmsXA' to JNDI name
'java:JmsXA'
10:26:27,187 INFO [TomcatDeployer] deploy, ctxPath=/WebAdmin,
warUrl=.../tmp/deploy/tmp57719WebAdmin-exp.war/
10:26:28,248 INFO [STDOUT] 10:26:28,247 INFO [FacesConfigurator]
Reading standard config
org/apache/myfaces/resource/standard-faces-config.xml
10:26:28,488 INFO [STDOUT] 10:26:28,487 INFO [FacesConfigurator]
Reading config
jar:file:/home/cihan/omero-3.0-Beta2/jboss-4.0.4.GA/server/default/tmp/deploy/tmp57719WebAdmin-exp.war/WEB-INF/lib/tomahawk-1.1.5.jar!/META-INF/faces-config.xml
10:26:28,602 INFO [STDOUT] 10:26:28,602 INFO [FacesConfigurator]
Reading config
jar:file:/home/cihan/omero-3.0-Beta2/jboss-4.0.4.GA/server/default/tmp/deploy/tmp57719WebAdmin-exp.war/WEB-INF/lib/tomahawk-sandbox-1.1.5.jar!/META-INF/faces-config.xml
10:26:28,692 INFO [STDOUT] 10:26:28,692 INFO [FacesConfigurator]
Reading config /WEB-INF/faces-config.xml
10:26:29,059 INFO [STDOUT] 10:26:29,059 INFO [FacesConfigurator]
Starting up MyFaces-package : myfaces-api in version : 1.1.5 from path :
file:/home/cihan/omero-3.0-Beta2/jboss-4.0.4.GA/server/default/tmp/deploy/tmp57719WebAdmin-exp.war/WEB-INF/lib/myfaces-api-1.1.5.jar
10:26:29,060 INFO [STDOUT] 10:26:29,060 INFO [FacesConfigurator]
Starting up MyFaces-package : myfaces-impl in version : 1.1.5 from path
:
file:/home/cihan/omero-3.0-Beta2/jboss-4.0.4.GA/server/default/tmp/deploy/tmp57719WebAdmin-exp.war/WEB-INF/lib/myfaces-impl-1.1.5.jar
10:26:29,060 INFO [STDOUT] 10:26:29,060 INFO [FacesConfigurator]
Starting up MyFaces-package : tomahawk-sandbox in version : 1.1.5 from
path :
file:/home/cihan/omero-3.0-Beta2/jboss-4.0.4.GA/server/default/tmp/deploy/tmp57719WebAdmin-exp.war/WEB-INF/lib/tomahawk-sandbox-1.1.5.jar
10:26:29,061 INFO [STDOUT] 10:26:29,060 INFO [FacesConfigurator]
Starting up MyFaces-package : tomahawk in version : 1.1.5 from path :
file:/home/cihan/omero-3.0-Beta2/jboss-4.0.4.GA/server/default/tmp/deploy/tmp57719WebAdmin-exp.war/WEB-INF/lib/tomahawk-1.1.5.jar
10:26:31,511 INFO [STDOUT] 10:26:31,511 INFO [HtmlRenderKitImpl]
Overwriting renderer with family = javax.faces.Form rendererType =
javax.faces.Form renderer class =
org.apache.myfaces.renderkit.html.ext.HtmlFormRenderer
10:26:31,728 INFO [STDOUT] 10:26:31,728 INFO [FacesConfigurator]
Serialization provider : class
org.apache.myfaces.shared_impl.util.serial.DefaultSerialFactory
10:26:31,776 INFO [STDOUT] 10:26:31,776 INFO
[StartupServletContextListener] ServletContext
'/home/cihan/omero-3.0-Beta2/jboss-4.0.4.GA/server/default/./tmp/deploy/tmp57719WebAdmin-exp.war/'
initialized.
10:26:31,824 INFO [STDOUT] 10:26:31,824 INFO [TilesServlet] Start
Tiles initialization
10:26:32,111 INFO [STDOUT] 10:26:32,110 INFO [TilesServlet] Try to
load Tiles factory
10:26:32,175 INFO [STDOUT] 10:26:32,174 INFO
[PropertyMessageResources] Initializing,
config='org.apache.struts.util.LocalStrings', returnNull=true
10:26:32,314 INFO [STDOUT] 10:26:32,314 INFO [TilesServlet] Tiles
Factory successfully loaded
10:26:32,550 INFO [TomcatDeployer] deploy, ctxPath=/jmx-console,
warUrl=.../deploy/jmx-console.war/
10:26:33,107 INFO [EARDeployer] Init J2EE application:
file:/home/cihan/omero-3.0-Beta2/jboss-4.0.4.GA/server/default/deploy/omero.ear
10:27:01,871 WARN [MainDeployer] Found non-jar deployer for
server-3.0-Beta2.jar: MBeanProxyExt[jboss.ejb3:service=EJB3Deployer]
10:27:38,465 INFO [Ejb3Deployment] EJB3 deployment time took: 1447
10:27:38,522 INFO [ConnectionFactoryBindingService] Bound
ConnectionManager 'jboss.jca:service=DataSourceBinding,name=omeroDS' to
JNDI name 'java:omeroDS'
10:27:40,567 INFO [JmxKernelAbstraction] installing MBean:
jboss.j2ee:ear=omero.ear,jar=server-3.0-Beta2.jar,name=AdminImpl,service=EJB3
with dependencies:
10:27:41,872 INFO [EJBContainer] STARTED EJB: ome.logic.AdminImpl
ejbName: AdminImpl
10:27:42,064 INFO [JmxKernelAbstraction] installing MBean:
jboss.j2ee:ear=omero.ear,jar=server-3.0-Beta2.jar,name=ConfigImpl,service=EJB3
with dependencies:
10:27:42,540 INFO [EJBContainer] STARTED EJB: ome.logic.ConfigImpl
ejbName: ConfigImpl
10:27:42,568 INFO [JmxKernelAbstraction] installing MBean:
jboss.j2ee:ear=omero.ear,jar=server-3.0-Beta2.jar,name=PixelsImpl,service=EJB3
with dependencies:
10:27:42,665 INFO [EJBContainer] STARTED EJB: ome.logic.PixelsImpl
ejbName: PixelsImpl
10:27:43,367 INFO [JmxKernelAbstraction] installing MBean:
jboss.j2ee:ear=omero.ear,jar=server-3.0-Beta2.jar,name=PojosImpl,service=EJB3
with dependencies:
10:27:43,660 INFO [EJBContainer] STARTED EJB: ome.logic.PojosImpl
ejbName: PojosImpl
10:27:43,740 INFO [JmxKernelAbstraction] installing MBean:
jboss.j2ee:ear=omero.ear,jar=server-3.0-Beta2.jar,name=QueryImpl,service=EJB3
with dependencies:
10:27:43,936 INFO [EJBContainer] STARTED EJB: ome.logic.QueryImpl
ejbName: QueryImpl
10:27:43,981 INFO [JmxKernelAbstraction] installing MBean:
jboss.j2ee:ear=omero.ear,jar=server-3.0-Beta2.jar,name=RepositoryInfoImpl,service=EJB3
with dependencies:
10:27:44,048 INFO [EJBContainer] STARTED EJB:
ome.logic.RepositoryInfoImpl ejbName: RepositoryInfoImpl
10:27:44,077 INFO [JmxKernelAbstraction] installing MBean:
jboss.j2ee:ear=omero.ear,jar=server-3.0-Beta2.jar,name=TypesImpl,service=EJB3
with dependencies:
10:27:44,160 INFO [EJBContainer] STARTED EJB: ome.logic.TypesImpl
ejbName: TypesImpl
10:27:44,187 INFO [JmxKernelAbstraction] installing MBean:
jboss.j2ee:ear=omero.ear,jar=server-3.0-Beta2.jar,name=UpdateImpl,service=EJB3
with dependencies:
10:27:44,297 INFO [EJBContainer] STARTED EJB: ome.logic.UpdateImpl
ejbName: UpdateImpl
10:27:44,326 INFO [JmxKernelAbstraction] installing MBean:
jboss.j2ee:ear=omero.ear,jar=server-3.0-Beta2.jar,name=JobBean,service=EJB3
with dependencies:
10:27:44,552 INFO [EJBContainer] STARTED EJB: ome.services.JobBean
ejbName: JobBean
10:27:44,647 INFO [JmxKernelAbstraction] installing MBean:
jboss.j2ee:ear=omero.ear,jar=server-3.0-Beta2.jar,name=RawFileBean,service=EJB3
with dependencies:
10:27:45,001 INFO [EJBContainer] STARTED EJB: ome.services.RawFileBean
ejbName: RawFileBean
10:27:45,023 INFO [JmxKernelAbstraction] installing MBean:
jboss.j2ee:ear=omero.ear,jar=server-3.0-Beta2.jar,name=RawPixelsBean,service=EJB3
with dependencies:
10:27:45,298 INFO [EJBContainer] STARTED EJB:
ome.services.RawPixelsBean ejbName: RawPixelsBean
10:27:45,350 INFO [JmxKernelAbstraction] installing MBean:
jboss.j2ee:ear=omero.ear,jar=server-3.0-Beta2.jar,name=RenderingBean,service=EJB3
with dependencies:
10:27:45,724 INFO [EJBContainer] STARTED EJB:
ome.services.RenderingBean ejbName: RenderingBean
10:27:45,745 INFO [JmxKernelAbstraction] installing MBean:
jboss.j2ee:ear=omero.ear,jar=server-3.0-Beta2.jar,name=ThumbnailBean,service=EJB3
with dependencies:
10:27:45,971 INFO [EJBContainer] STARTED EJB:
ome.services.ThumbnailBean ejbName: ThumbnailBean
10:27:46,009 INFO [JmxKernelAbstraction] installing MBean:
jboss.j2ee:ear=omero.ear,jar=server-3.0-Beta2.jar,name=OmeroContextHook,service=EJB3
with dependencies:
10:27:46,065 INFO [EJBContainer] STARTED EJB:
ome.services.jboss.OmeroContextHook ejbName: OmeroContextHook
10:27:46,235 INFO [CollectionFactory] JDK 1.4+ collections available
10:27:46,250 INFO [CollectionFactory] Commons Collections 3.x available
10:27:46,368 INFO [XmlBeanDefinitionReader] Loading XML bean
definitions from URL
[jar:file:/home/cihan/omero-3.0-Beta2/jboss-4.0.4.GA/server/default/tmp/deploy/tmp57720omero.ear-contents/blitz-3.0-Beta2.jar!/beanRefContext.xml]
10:27:46,581 INFO [XmlBeanDefinitionReader] Loading XML bean
definitions from URL
[jar:file:/home/cihan/omero-3.0-Beta2/jboss-4.0.4.GA/server/default/tmp/deploy/tmp57720omero.ear-contents/server-3.0-Beta2.jar!/beanRefContext.xml]
10:27:46,603 INFO [DefaultListableBeanFactory] Overriding bean
definition for bean 'placeholderConfig': replacing [Root bean: class
[org.springframework.beans.factory.config.PropertyPlaceholderConfigurer];
scope=singleton; abstract=false; lazyInit=false; autowireCandidate=true;
autowireMode=0; dependencyCheck=0; factoryBeanName=null;
factoryMethodName=null; initMethodName=null; destroyMethodName=null;
defined in URL
[jar:file:/home/cihan/omero-3.0-Beta2/jboss-4.0.4.GA/server/default/tmp/deploy/tmp57720omero.ear-contents/blitz-3.0-Beta2.jar!/beanRefContext.xml]]
with [Root bean: class
[org.springframework.beans.factory.config.PropertyPlaceholderConfigurer];
scope=singleton; abstract=false; lazyInit=false; autowireCandidate=true;
autowireMode=0; dependencyCheck=0; factoryBeanName=null;
factoryMethodName=null; initMethodName=null; destroyMethodName=null;
defined in URL
[jar:file:/home/cihan/omero-3.0-Beta2/jboss-4.0.4.GA/server/default/tmp/deploy/tmp57720omero.ear-contents/server-3.0-Beta2.jar!/beanRefContext.xml]]
10:27:46,609 INFO [ClassPathXmlApplicationContext] Bean factory for
application context
[org.springframework.context.support.ClassPathXmlApplicationContext;hashCode=9902580]:
org.springframework.beans.factory.support.DefaultListableBeanFactory
defining beans [placeholderConfig,OMERO.blitz,OMERO.client,ome.server];
root of BeanFactory hierarchy
10:27:46,621 INFO [ClassPathXmlApplicationContext] 4 beans defined in
application context
[org.springframework.context.support.ClassPathXmlApplicationContext;hashCode=9902580]
10:27:46,796 INFO [PropertyPlaceholderConfigurer] Loading properties
file from class path resource [hibernate.properties]
10:27:46,797 INFO [PropertyPlaceholderConfigurer] Loading properties
file from class path resource [omero.properties]
10:27:46,798 INFO [PropertyPlaceholderConfigurer] Loading properties
file from class path resource [ejb.properties]
10:27:46,811 INFO [ClassPathXmlApplicationContext] Unable to locate
MessageSource with name 'messageSource': using default
[org.springframework.context.support.DelegatingMessageSource at 34d46a]
10:27:46,820 INFO [ClassPathXmlApplicationContext] Unable to locate
ApplicationEventMulticaster with name 'applicationEventMulticaster':
using default
[org.springframework.context.event.SimpleApplicationEventMulticaster at 144d0c6]
10:27:46,822 INFO [DefaultListableBeanFactory] Pre-instantiating
singletons in factory
[org.springframework.beans.factory.support.DefaultListableBeanFactory
defining beans [placeholderConfig,OMERO.blitz,OMERO.client,ome.server];
root of BeanFactory hierarchy]
10:27:46,860 INFO [XmlBeanDefinitionReader] Loading XML bean
definitions from class path resource [ome/services/config-local.xml]
10:27:46,881 INFO [XmlBeanDefinitionReader] Loading XML bean
definitions from class path resource [ome/services/security.xml]
10:27:46,931 INFO [XmlBeanDefinitionReader] Loading XML bean
definitions from class path resource [ome/services/services.xml]
10:27:47,018 INFO [XmlBeanDefinitionReader] Loading XML bean
definitions from URL
[jar:file:/home/cihan/omero-3.0-Beta2/jboss-4.0.4.GA/server/default/tmp/deploy/tmp57720omero.ear-contents/server-3.0-Beta2.jar!/ome/services/service-ome.api.IAdmin.xml]
10:27:47,533 INFO [XmlBeanDefinitionReader] Loading XML bean
definitions from URL
[jar:file:/home/cihan/omero-3.0-Beta2/jboss-4.0.4.GA/server/default/tmp/deploy/tmp57720omero.ear-contents/server-3.0-Beta2.jar!/ome/services/service-ome.api.IAnalysis.xml]
10:27:47,553 INFO [XmlBeanDefinitionReader] Loading XML bean
definitions from URL
[jar:file:/home/cihan/omero-3.0-Beta2/jboss-4.0.4.GA/server/default/tmp/deploy/tmp57720omero.ear-contents/server-3.0-Beta2.jar!/ome/services/service-ome.api.IConfig.xml]
10:27:47,573 INFO [XmlBeanDefinitionReader] Loading XML bean
definitions from URL
[jar:file:/home/cihan/omero-3.0-Beta2/jboss-4.0.4.GA/server/default/tmp/deploy/tmp57720omero.ear-contents/server-3.0-Beta2.jar!/ome/services/service-ome.api.IPixels.xml]
10:27:47,593 INFO [XmlBeanDefinitionReader] Loading XML bean
definitions from URL
[jar:file:/home/cihan/omero-3.0-Beta2/jboss-4.0.4.GA/server/default/tmp/deploy/tmp57720omero.ear-contents/server-3.0-Beta2.jar!/ome/services/service-ome.api.IPojos.xml]
10:27:47,613 INFO [XmlBeanDefinitionReader] Loading XML bean
definitions from URL
[jar:file:/home/cihan/omero-3.0-Beta2/jboss-4.0.4.GA/server/default/tmp/deploy/tmp57720omero.ear-contents/server-3.0-Beta2.jar!/ome/services/service-ome.api.IQuery.xml]
10:27:47,634 INFO [XmlBeanDefinitionReader] Loading XML bean
definitions from URL
[jar:file:/home/cihan/omero-3.0-Beta2/jboss-4.0.4.GA/server/default/tmp/deploy/tmp57720omero.ear-contents/server-3.0-Beta2.jar!/ome/services/service-ome.api.IRepositoryInfo.xml]
10:27:47,655 INFO [XmlBeanDefinitionReader] Loading XML bean
definitions from URL
[jar:file:/home/cihan/omero-3.0-Beta2/jboss-4.0.4.GA/server/default/tmp/deploy/tmp57720omero.ear-contents/server-3.0-Beta2.jar!/ome/services/service-ome.api.IScale.xml]
10:27:47,673 INFO [XmlBeanDefinitionReader] Loading XML bean
definitions from URL
[jar:file:/home/cihan/omero-3.0-Beta2/jboss-4.0.4.GA/server/default/tmp/deploy/tmp57720omero.ear-contents/server-3.0-Beta2.jar!/ome/services/service-ome.api.IThumb.xml]
10:27:47,694 INFO [XmlBeanDefinitionReader] Loading XML bean
definitions from URL
[jar:file:/home/cihan/omero-3.0-Beta2/jboss-4.0.4.GA/server/default/tmp/deploy/tmp57720omero.ear-contents/server-3.0-Beta2.jar!/ome/services/service-ome.api.ITypes.xml]
10:27:47,714 INFO [XmlBeanDefinitionReader] Loading XML bean
definitions from URL
[jar:file:/home/cihan/omero-3.0-Beta2/jboss-4.0.4.GA/server/default/tmp/deploy/tmp57720omero.ear-contents/server-3.0-Beta2.jar!/ome/services/service-ome.api.IUpdate.xml]
10:27:47,770 INFO [XmlBeanDefinitionReader] Loading XML bean
definitions from URL
[jar:file:/home/cihan/omero-3.0-Beta2/jboss-4.0.4.GA/server/default/tmp/deploy/tmp57720omero.ear-contents/server-3.0-Beta2.jar!/ome/services/service-ome.api.JobHandle.xml]
10:27:47,801 INFO [XmlBeanDefinitionReader] Loading XML bean
definitions from URL
[jar:file:/home/cihan/omero-3.0-Beta2/jboss-4.0.4.GA/server/default/tmp/deploy/tmp57720omero.ear-contents/server-3.0-Beta2.jar!/ome/services/service-ome.api.RawFileStore.xml]
10:27:47,822 INFO [XmlBeanDefinitionReader] Loading XML bean
definitions from URL
[jar:file:/home/cihan/omero-3.0-Beta2/jboss-4.0.4.GA/server/default/tmp/deploy/tmp57720omero.ear-contents/server-3.0-Beta2.jar!/ome/services/service-ome.api.RawPixelsStore.xml]
10:27:47,905 INFO [XmlBeanDefinitionReader] Loading XML bean
definitions from URL
[jar:file:/home/cihan/omero-3.0-Beta2/jboss-4.0.4.GA/server/default/tmp/deploy/tmp57720omero.ear-contents/server-3.0-Beta2.jar!/ome/services/service-ome.io.nio.OriginalFilesService.xml]
10:27:47,926 INFO [XmlBeanDefinitionReader] Loading XML bean
definitions from URL
[jar:file:/home/cihan/omero-3.0-Beta2/jboss-4.0.4.GA/server/default/tmp/deploy/tmp57720omero.ear-contents/server-3.0-Beta2.jar!/ome/services/service-ome.io.nio.PixelsService.xml]
10:27:47,944 INFO [XmlBeanDefinitionReader] Loading XML bean
definitions from URL
[jar:file:/home/cihan/omero-3.0-Beta2/jboss-4.0.4.GA/server/default/tmp/deploy/tmp57720omero.ear-contents/server-3.0-Beta2.jar!/ome/services/service-ome.io.nio.ThumbnailService.xml]
10:27:47,962 INFO [XmlBeanDefinitionReader] Loading XML bean
definitions from URL
[jar:file:/home/cihan/omero-3.0-Beta2/jboss-4.0.4.GA/server/default/tmp/deploy/tmp57720omero.ear-contents/server-3.0-Beta2.jar!/ome/services/service-omeis.providers.re.RenderingEngine.xml]
10:27:47,982 INFO [XmlBeanDefinitionReader] Loading XML bean
definitions from class path resource [ome/services/hibernate.xml]
10:27:48,014 INFO [XmlBeanDefinitionReader] Loading XML bean
definitions from class path resource [ome/services/in-container.xml]
10:27:50,137 INFO [OmeroContext] Bean factory for application context
[ome.system.OmeroContext;hashCode=21319528]:
org.springframework.beans.factory.support.DefaultListableBeanFactory
defining beans
[placeholderConfig,securitySystem,securityWiring,eventListeners,eventHandler,omeroInterceptor,securityFilter,ome.tools.spring.PostProcessInjector,managedService,managedStatefulService,serviceHandler,profile,bean,level1,level2,level3,stateful,binary,filesystem,queryFactory,internal:ome.services.util.OmeroAroundInvokeName,internal:ome.api.IAdmin,managed:ome.api.IAdmin,internal:ome.api.IAnalysis,managed:ome.api.IAnalysis,internal:ome.api.IConfig,managed:ome.api.IConfig,internal:ome.api.IPixels,managed:ome.api.IPixels,internal:ome.api.IPojos,managed:ome.api.IPojos,internal:ome.api.IQuery,managed:ome.api.IQuery,internal:ome.api.IRepositoryInfo,managed:ome.api.IRepositoryInfo,internal:ome.api.IScale,internal:ome.api.ThumbnailStore,managed:ome.api.ThumbnailStore,internal:ome.api.ITypes,managed:ome.api.ITypes,internal:ome.api.IUpdate,managed:ome.api.IUpdate,internal:ome.api.JobHandle,managed:ome.api.JobHandle,processManager,processJobsDetail,processJobsTrigger,org.springframework.scheduling.quartz.SchedulerFactoryBean,internal:ome.api.RawFileStore,managed:ome.api.RawFileStore,internal:ome.api.RawPixelsStore,managed:ome.api.RawPixelsStore,/OMERO/Files,/OMERO/Pixels,/OMERO/Thumbs,internal:omeis.providers.re.RenderingEngine,managed:omeis.providers.re.RenderingEngine,extendedMetadata,proxyHandler,sessionHandler,hibernateHandler,hibernateTemplate,sessionFactory,methodSecurity,hibernateProperties,transactionManager,transactionHandler,simpleJdbcTemplate,jdbcTemplate,dataSource];
root of BeanFactory hierarchy
10:27:50,138 INFO [OmeroContext] 70 beans defined in application
context [ome.system.OmeroContext;hashCode=21319528]
10:27:50,325 INFO [PropertyPlaceholderConfigurer] Loading properties
file from class path resource [hibernate.properties]
10:27:50,325 INFO [PropertyPlaceholderConfigurer] Loading properties
file from class path resource [omero.properties]
10:27:50,326 INFO [PropertyPlaceholderConfigurer] Loading properties
file from class path resource [local.properties]
10:27:50,327 INFO [PropertyPlaceholderConfigurer] Loading properties
file from class path resource [ejb.properties]
10:27:50,384 INFO [OmeroContext] Unable to locate MessageSource with
name 'messageSource': using default
[org.springframework.context.support.DelegatingMessageSource at 23a559]
10:27:50,384 INFO [OmeroContext] Unable to locate
ApplicationEventMulticaster with name 'applicationEventMulticaster':
using default
[org.springframework.context.event.SimpleApplicationEventMulticaster at 3c8db9]
10:27:50,410 INFO [DefaultListableBeanFactory] Pre-instantiating
singletons in factory
[org.springframework.beans.factory.support.DefaultListableBeanFactory
defining beans
[placeholderConfig,securitySystem,securityWiring,eventListeners,eventHandler,omeroInterceptor,securityFilter,ome.tools.spring.PostProcessInjector,managedService,managedStatefulService,serviceHandler,profile,bean,level1,level2,level3,stateful,binary,filesystem,queryFactory,internal:ome.services.util.OmeroAroundInvokeName,internal:ome.api.IAdmin,managed:ome.api.IAdmin,internal:ome.api.IAnalysis,managed:ome.api.IAnalysis,internal:ome.api.IConfig,managed:ome.api.IConfig,internal:ome.api.IPixels,managed:ome.api.IPixels,internal:ome.api.IPojos,managed:ome.api.IPojos,internal:ome.api.IQuery,managed:ome.api.IQuery,internal:ome.api.IRepositoryInfo,managed:ome.api.IRepositoryInfo,internal:ome.api.IScale,internal:ome.api.ThumbnailStore,managed:ome.api.ThumbnailStore,internal:ome.api.ITypes,managed:ome.api.ITypes,internal:ome.api.IUpdate,managed:ome.api.IUpdate,internal:ome.api.JobHandle,managed:ome.api.JobHandle,processManager,processJobsDetail,processJobsTrigger,org.springframework.scheduling.quartz.SchedulerFactoryBean,internal:ome.api.RawFileStore,managed:ome.api.RawFileStore,internal:ome.api.RawPixelsStore,managed:ome.api.RawPixelsStore,/OMERO/Files,/OMERO/Pixels,/OMERO/Thumbs,internal:omeis.providers.re.RenderingEngine,managed:omeis.providers.re.RenderingEngine,extendedMetadata,proxyHandler,sessionHandler,hibernateHandler,hibernateTemplate,sessionFactory,methodSecurity,hibernateProperties,transactionManager,transactionHandler,simpleJdbcTemplate,jdbcTemplate,dataSource];
root of BeanFactory hierarchy]
10:27:50,736 INFO [DefaultAopProxyFactory] CGLIB2 available:
proxyTargetClass feature enabled
10:27:51,402 INFO [Environment] Hibernate 3.2.2
10:27:51,410 INFO [Environment] loaded properties from resource
hibernate.properties: {database.name=omero3, hibernate.show_sql=false,
database.profile=psql, database.host=localhost,
container.status=out-of-container, hibernate.jdbc.batch_size=0,
hibernate.bytecode.use_reflection_optimizer=false}
10:27:51,411 INFO [Environment] Bytecode provider name : javassist
10:27:51,424 INFO [Environment] using JDK 1.4 java.sql.Timestamp handling
10:27:51,431 INFO [Configuration] configuring from url:
jar:file:/home/cihan/omero-3.0-Beta2/jboss-4.0.4.GA/server/default/tmp/deploy/tmp57720omero.ear-contents/common-3.0-Beta2.jar!/hibernate.cfg.xml
10:27:51,635 INFO [Configuration] Reading mappings from resource :
ome/model/acquisition/Dichroic.hbm.xml
10:27:51,919 INFO [HbmBinder] Mapping class:
ome.model.acquisition.Dichroic -> dichroic
10:27:51,990 INFO [Configuration] Reading mappings from resource :
ome/model/results/NucleusEccentricity.hbm.xml
10:27:52,608 INFO [HbmBinder] Mapping class:
ome.model.results.NucleusEccentricity -> nucleuseccentricity
10:27:52,616 INFO [Configuration] Reading mappings from resource :
ome/model/acquisition/ImagingEnvironment.hbm.xml
10:27:52,667 INFO [HbmBinder] Mapping class:
ome.model.acquisition.ImagingEnvironment -> imagingenvironment
10:27:52,677 INFO [Configuration] Reading mappings from resource :
ome/model/roi/RoiMap.hbm.xml
10:27:52,929 INFO [HbmBinder] Mapping class: ome.model.roi.RoiMap -> roimap
10:27:52,969 INFO [Configuration] Reading mappings from resource :
ome/model/experiment/Experiment.hbm.xml
10:27:53,055 INFO [HbmBinder] Mapping class:
ome.model.experiment.Experiment -> experiment
10:27:53,062 INFO [Configuration] Reading mappings from resource :
ome/model/results/CellArea.hbm.xml
10:27:53,294 INFO [HbmBinder] Mapping class: ome.model.results.CellArea
-> cellarea
10:27:53,300 INFO [Configuration] Reading mappings from resource :
ome/model/roi/Roi5D.hbm.xml
10:27:53,522 INFO [HbmBinder] Mapping class: ome.model.roi.Roi5D -> roi5d
10:27:53,545 INFO [Configuration] Reading mappings from resource :
ome/model/results/CellSolidity.hbm.xml
10:27:53,597 INFO [HbmBinder] Mapping class:
ome.model.results.CellSolidity -> cellsolidity
10:27:53,603 INFO [Configuration] Reading mappings from resource :
ome/model/enums/Immersion.hbm.xml
10:27:53,639 INFO [HbmBinder] Mapping class: ome.model.enums.Immersion
-> immersion
10:27:53,686 INFO [Configuration] Reading mappings from resource :
ome/model/uroi/Metadata.hbm.xml
10:27:53,733 INFO [HbmBinder] Mapping class: ome.model.uroi.Metadata ->
metadata
10:27:53,739 INFO [Configuration] Reading mappings from resource :
ome/model/uroi/DummyStatistics.hbm.xml
10:27:54,438 INFO [HbmBinder] Mapping joined-subclass:
ome.model.uroi.DummyStatistics -> dummystatistics
10:27:54,439 INFO [Configuration] Reading mappings from resource :
ome/model/acquisition/StageLabel.hbm.xml
10:27:54,570 INFO [HbmBinder] Mapping class:
ome.model.acquisition.StageLabel -> stagelabel
10:27:54,577 INFO [Configuration] Reading mappings from resource :
ome/model/acquisition/ObjectiveSettings.hbm.xml
10:27:55,292 INFO [HbmBinder] Mapping class:
ome.model.acquisition.ObjectiveSettings -> objectivesettings
10:27:55,300 INFO [Configuration] Reading mappings from resource :
ome/model/containers/CategoryImageLink.hbm.xml
10:27:55,340 INFO [HbmBinder] Mapping class:
ome.model.containers.CategoryImageLink -> categoryimagelink
10:27:55,347 INFO [Configuration] Reading mappings from resource :
ome/model/core/Pixels.hbm.xml
10:27:55,395 INFO [HbmBinder] Mapping class: ome.model.core.Pixels ->
pixels
10:27:55,421 INFO [Configuration] Reading mappings from resource :
ome/model/uroi/XYZtoXYLink.hbm.xml
10:27:55,461 INFO [HbmBinder] Mapping class: ome.model.uroi.XYZtoXYLink
-> xyztoxylink
10:27:55,468 INFO [Configuration] Reading mappings from resource :
ome/model/enums/OverlayType.hbm.xml
10:27:56,140 INFO [HbmBinder] Mapping class:
ome.model.enums.OverlayType -> overlaytype
10:27:56,146 INFO [Configuration] Reading mappings from resource :
ome/model/internal/Link.hbm.xml
10:27:56,208 INFO [HbmBinder] Mapping class: ome.model.internal.Link ->
link
10:27:56,214 INFO [Configuration] Reading mappings from resource :
ome/model/enums/ArcType.hbm.xml
10:27:56,238 INFO [HbmBinder] Mapping class: ome.model.enums.ArcType ->
arctype
10:27:56,244 INFO [Configuration] Reading mappings from resource :
ome/model/stats/StatsInfo.hbm.xml
10:27:56,269 INFO [HbmBinder] Mapping class: ome.model.stats.StatsInfo
-> statsinfo
10:27:56,276 INFO [Configuration] Reading mappings from resource :
ome/model/display/ChannelBinding.hbm.xml
10:27:56,304 INFO [HbmBinder] Mapping class:
ome.model.display.ChannelBinding -> channelbinding
10:27:56,313 INFO [Configuration] Reading mappings from resource :
ome/model/results/CellExtent.hbm.xml
10:27:56,338 INFO [HbmBinder] Mapping class:
ome.model.results.CellExtent -> cellextent
10:27:56,344 INFO [Configuration] Reading mappings from resource :
ome/model/results/NucleusMinorAxisLength.hbm.xml
10:27:56,380 INFO [HbmBinder] Mapping class:
ome.model.results.NucleusMinorAxisLength -> nucleusminoraxislength
10:27:56,386 INFO [Configuration] Reading mappings from resource :
ome/model/enums/RenderingModel.hbm.xml
10:27:56,412 INFO [HbmBinder] Mapping class:
ome.model.enums.RenderingModel -> renderingmodel
10:27:56,418 INFO [Configuration] Reading mappings from resource :
ome/model/meta/ExperimenterGroup.hbm.xml
10:27:56,465 INFO [HbmBinder] Mapping class:
ome.model.meta.ExperimenterGroup -> experimentergroup
10:27:56,474 INFO [Configuration] Reading mappings from resource :
ome/model/uroi/XYZCTtoXYCTLink.hbm.xml
10:27:56,500 INFO [HbmBinder] Mapping class:
ome.model.uroi.XYZCTtoXYCTLink -> xyzcttoxyctlink
10:27:56,506 INFO [Configuration] Reading mappings from resource :
ome/model/meta/GroupExperimenterMap.hbm.xml
10:27:56,609 INFO [HbmBinder] Mapping class:
ome.model.meta.GroupExperimenterMap -> groupexperimentermap
10:27:56,616 INFO [Configuration] Reading mappings from resource :
ome/model/acquisition/FilterSet.hbm.xml
10:27:56,949 INFO [HbmBinder] Mapping class:
ome.model.acquisition.FilterSet -> filterset
10:27:56,956 INFO [Configuration] Reading mappings from resource :
ome/model/uroi/XYCTtoXYTLink.hbm.xml
10:27:56,982 INFO [HbmBinder] Mapping class:
ome.model.uroi.XYCTtoXYTLink -> xycttoxytlink
10:27:56,988 INFO [Configuration] Reading mappings from resource :
ome/model/results/ImageNucleasCount.hbm.xml
10:27:57,022 INFO [HbmBinder] Mapping class:
ome.model.results.ImageNucleasCount -> imagenucleascount
10:27:57,029 INFO [Configuration] Reading mappings from resource :
ome/model/meta/Event.hbm.xml
10:27:57,066 INFO [HbmBinder] Mapping class: ome.model.meta.Event -> event
10:27:57,071 INFO [Configuration] Reading mappings from resource :
ome/model/acquisition/EmissionFilter.hbm.xml
10:27:57,096 INFO [HbmBinder] Mapping class:
ome.model.acquisition.EmissionFilter -> emissionfilter
10:27:57,102 INFO [Configuration] Reading mappings from resource :
ome/model/enums/AcquisitionMode.hbm.xml
10:27:57,183 INFO [HbmBinder] Mapping class:
ome.model.enums.AcquisitionMode -> acquisitionmode
10:27:57,188 INFO [Configuration] Reading mappings from resource :
ome/model/core/OriginalFile.hbm.xml
10:27:57,244 INFO [HbmBinder] Mapping class:
ome.model.core.OriginalFile -> originalfile
10:27:57,255 INFO [Configuration] Reading mappings from resource :
ome/model/annotations/ImageAnnotation.hbm.xml
10:27:57,279 INFO [HbmBinder] Mapping class:
ome.model.annotations.ImageAnnotation -> imageannotation
10:27:57,327 INFO [Configuration] Reading mappings from resource :
ome/model/containers/CategoryGroupCategoryLink.hbm.xml
10:27:57,354 INFO [HbmBinder] Mapping class:
ome.model.containers.CategoryGroupCategoryLink -> categorygroupcategorylink
10:27:57,361 INFO [Configuration] Reading mappings from resource :
ome/model/uroi/XYCtoXYLink.hbm.xml
10:27:57,385 INFO [HbmBinder] Mapping class: ome.model.uroi.XYCtoXYLink
-> xyctoxylink
10:27:57,392 INFO [Configuration] Reading mappings from resource :
ome/model/uroi/XYTtoXYLink.hbm.xml
10:27:57,480 INFO [HbmBinder] Mapping class: ome.model.uroi.XYTtoXYLink
-> xyttoxylink
10:27:57,487 INFO [Configuration] Reading mappings from resource :
ome/model/display/Thumbnail.hbm.xml
10:27:57,933 INFO [HbmBinder] Mapping class:
ome.model.display.Thumbnail -> thumbnail
10:27:57,940 INFO [Configuration] Reading mappings from resource :
ome/model/display/RenderingDef.hbm.xml
10:27:57,989 INFO [HbmBinder] Mapping class:
ome.model.display.RenderingDef -> renderingdef
10:27:58,002 INFO [Configuration] Reading mappings from resource :
ome/model/enums/Binning.hbm.xml
10:27:58,052 INFO [HbmBinder] Mapping class: ome.model.enums.Binning ->
binning
10:27:58,058 INFO [Configuration] Reading mappings from resource :
ome/model/display/Color.hbm.xml
10:27:58,086 INFO [HbmBinder] Mapping class: ome.model.display.Color ->
color
10:27:58,093 INFO [Configuration] Reading mappings from resource :
ome/model/enums/Family.hbm.xml
10:27:58,116 INFO [HbmBinder] Mapping class: ome.model.enums.Family ->
family
10:27:58,122 INFO [Configuration] Reading mappings from resource :
ome/model/uroi/XYZTtoXYTLink.hbm.xml
10:27:58,144 INFO [HbmBinder] Mapping class:
ome.model.uroi.XYZTtoXYTLink -> xyzttoxytlink
10:27:58,151 INFO [Configuration] Reading mappings from resource :
ome/model/acquisition/LightSource.hbm.xml
10:27:58,174 INFO [HbmBinder] Mapping class:
ome.model.acquisition.LightSource -> lightsource
10:27:58,181 INFO [Configuration] Reading mappings from resource :
ome/model/acquisition/Filament.hbm.xml
10:27:58,735 INFO [HbmBinder] Mapping joined-subclass:
ome.model.acquisition.Filament -> filament
10:27:58,736 INFO [Configuration] Reading mappings from resource :
ome/model/acquisition/Laser.hbm.xml
10:27:58,777 INFO [HbmBinder] Mapping joined-subclass:
ome.model.acquisition.Laser -> laser
10:27:58,781 INFO [Configuration] Reading mappings from resource :
ome/model/acquisition/Arc.hbm.xml
10:27:58,797 INFO [HbmBinder] Mapping joined-subclass:
ome.model.acquisition.Arc -> arc
10:27:58,798 INFO [Configuration] Reading mappings from resource :
ome/model/enums/Medium.hbm.xml
10:27:58,906 INFO [HbmBinder] Mapping class: ome.model.enums.Medium ->
medium
10:27:58,912 INFO [Configuration] Reading mappings from resource :
ome/model/uroi/XYZTtoXYZLink.hbm.xml
10:27:58,964 INFO [HbmBinder] Mapping class:
ome.model.uroi.XYZTtoXYZLink -> xyzttoxyzlink
10:27:58,971 INFO [Configuration] Reading mappings from resource :
ome/model/containers/Project.hbm.xml
10:27:58,995 INFO [HbmBinder] Mapping class:
ome.model.containers.Project -> project
10:27:59,007 INFO [Configuration] Reading mappings from resource :
ome/model/results/NucleusPerimeter.hbm.xml
10:27:59,040 INFO [HbmBinder] Mapping class:
ome.model.results.NucleusPerimeter -> nucleusperimeter
10:27:59,046 INFO [Configuration] Reading mappings from resource :
ome/model/containers/ProjectDatasetLink.hbm.xml
10:27:59,066 INFO [HbmBinder] Mapping class:
ome.model.containers.ProjectDatasetLink -> projectdatasetlink
10:27:59,075 INFO [Configuration] Reading mappings from resource :
ome/model/results/CellPosition.hbm.xml
10:27:59,114 INFO [HbmBinder] Mapping class:
ome.model.results.CellPosition -> cellposition
10:27:59,120 INFO [Configuration] Reading mappings from resource :
ome/model/acquisition/DetectorSettings.hbm.xml
10:27:59,142 INFO [HbmBinder] Mapping class:
ome.model.acquisition.DetectorSettings -> detectorsettings
10:27:59,205 INFO [Configuration] Reading mappings from resource :
ome/model/containers/DatasetImageLink.hbm.xml
10:27:59,225 INFO [HbmBinder] Mapping class:
ome.model.containers.DatasetImageLink -> datasetimagelink
10:27:59,243 INFO [Configuration] Reading mappings from resource :
ome/model/results/CellEccentricity.hbm.xml
10:27:59,263 INFO [HbmBinder] Mapping class:
ome.model.results.CellEccentricity -> celleccentricity
10:27:59,269 INFO [Configuration] Reading mappings from resource :
ome/model/enums/PixelsType.hbm.xml
10:27:59,294 INFO [HbmBinder] Mapping class: ome.model.enums.PixelsType
-> pixelstype
10:27:59,300 INFO [Configuration] Reading mappings from resource :
ome/model/enums/Format.hbm.xml
10:27:59,318 INFO [HbmBinder] Mapping class: ome.model.enums.Format ->
format
10:27:59,324 INFO [Configuration] Reading mappings from resource :
ome/model/roi/RoiSet.hbm.xml
10:27:59,345 INFO [HbmBinder] Mapping class: ome.model.roi.RoiSet -> roiset
10:27:59,354 INFO [Configuration] Reading mappings from resource :
ome/model/core/LogicalChannel.hbm.xml
10:27:59,375 INFO [HbmBinder] Mapping class:
ome.model.core.LogicalChannel -> logicalchannel
10:27:59,386 INFO [Configuration] Reading mappings from resource :
ome/model/enums/LaserType.hbm.xml
10:27:59,405 INFO [HbmBinder] Mapping class: ome.model.enums.LaserType
-> lasertype
10:27:59,410 INFO [Configuration] Reading mappings from resource :
ome/model/enums/Pulse.hbm.xml
10:27:59,429 INFO [HbmBinder] Mapping class: ome.model.enums.Pulse -> pulse
10:27:59,434 INFO [Configuration] Reading mappings from resource :
ome/model/uroi/XYZCTtoXYZTLink.hbm.xml
10:27:59,455 INFO [HbmBinder] Mapping class:
ome.model.uroi.XYZCTtoXYZTLink -> xyzcttoxyztlink
10:27:59,461 INFO [Configuration] Reading mappings from resource :
ome/model/containers/CategoryGroup.hbm.xml
10:27:59,483 INFO [HbmBinder] Mapping class:
ome.model.containers.CategoryGroup -> categorygroup
10:27:59,491 INFO [Configuration] Reading mappings from resource :
ome/model/acquisition/TransmittanceRange.hbm.xml
10:27:59,512 INFO [HbmBinder] Mapping class:
ome.model.acquisition.TransmittanceRange -> transmittancerange
10:27:59,519 INFO [Configuration] Reading mappings from resource :
ome/model/results/CellMinorAxisLength.hbm.xml
10:27:59,590 INFO [HbmBinder] Mapping class:
ome.model.results.CellMinorAxisLength -> cellminoraxislength
10:27:59,596 INFO [Configuration] Reading mappings from resource :
ome/model/acquisition/Microscope.hbm.xml
10:27:59,625 INFO [HbmBinder] Mapping class:
ome.model.acquisition.Microscope -> microscope
10:27:59,632 INFO [Configuration] Reading mappings from resource :
ome/model/acquisition/ExcitationFilter.hbm.xml
10:27:59,652 INFO [HbmBinder] Mapping class:
ome.model.acquisition.ExcitationFilter -> excitationfilter
10:27:59,659 INFO [Configuration] Reading mappings from resource :
ome/model/jobs/Job.hbm.xml
10:27:59,681 INFO [HbmBinder] Mapping class: ome.model.jobs.Job -> job
10:27:59,690 INFO [Configuration] Reading mappings from resource :
ome/model/jobs/ImportJob.hbm.xml
10:27:59,759 INFO [HbmBinder] Mapping joined-subclass:
ome.model.jobs.ImportJob -> importjob
10:27:59,761 INFO [Configuration] Reading mappings from resource :
ome/model/core/PixelsDimensions.hbm.xml
10:27:59,780 INFO [HbmBinder] Mapping class:
ome.model.core.PixelsDimensions -> pixelsdimensions
10:27:59,787 INFO [Configuration] Reading mappings from resource :
ome/model/display/CodomainMapContext.hbm.xml
10:27:59,805 INFO [HbmBinder] Mapping class:
ome.model.display.CodomainMapContext -> codomainmapcontext
10:27:59,811 INFO [Configuration] Reading mappings from resource :
ome/model/display/ContrastStretchingContext.hbm.xml
10:27:59,849 INFO [HbmBinder] Mapping joined-subclass:
ome.model.display.ContrastStretchingContext -> contraststretchingcontext
10:27:59,850 INFO [Configuration] Reading mappings from resource :
ome/model/display/PlaneSlicingContext.hbm.xml
10:27:59,865 INFO [HbmBinder] Mapping joined-subclass:
ome.model.display.PlaneSlicingContext -> planeslicingcontext
10:27:59,867 INFO [Configuration] Reading mappings from resource :
ome/model/display/ReverseIntensityContext.hbm.xml
10:27:59,882 INFO [HbmBinder] Mapping joined-subclass:
ome.model.display.ReverseIntensityContext -> reverseintensitycontext
10:27:59,883 INFO [Configuration] Reading mappings from resource :
ome/model/jobs/JobStatus.hbm.xml
10:27:59,903 INFO [HbmBinder] Mapping class: ome.model.jobs.JobStatus
-> jobstatus
10:27:59,908 INFO [Configuration] Reading mappings from resource :
ome/model/uroi/XYCTtoXYCLink.hbm.xml
10:27:59,933 INFO [HbmBinder] Mapping class:
ome.model.uroi.XYCTtoXYCLink -> xycttoxyclink
10:27:59,940 INFO [Configuration] Reading mappings from resource :
ome/model/enums/Coating.hbm.xml
10:27:59,957 INFO [HbmBinder] Mapping class: ome.model.enums.Coating ->
coating
10:27:59,963 INFO [Configuration] Reading mappings from resource :
ome/model/enums/DetectorType.hbm.xml
10:27:59,981 INFO [HbmBinder] Mapping class:
ome.model.enums.DetectorType -> detectortype
10:27:59,986 INFO [Configuration] Reading mappings from resource :
ome/model/enums/Illumination.hbm.xml
10:28:00,004 INFO [HbmBinder] Mapping class:
ome.model.enums.Illumination -> illumination
10:28:00,011 INFO [Configuration] Reading mappings from resource :
ome/model/uroi/XYZCtoXYZLink.hbm.xml
10:28:00,031 INFO [HbmBinder] Mapping class:
ome.model.uroi.XYZCtoXYZLink -> xyzctoxyzlink
10:28:00,037 INFO [Configuration] Reading mappings from resource :
ome/model/uroi/XYZCTtoXYZCLink.hbm.xml
10:28:00,056 INFO [HbmBinder] Mapping class:
ome.model.uroi.XYZCTtoXYZCLink -> xyzcttoxyzclink
10:28:00,063 INFO [Configuration] Reading mappings from resource :
ome/model/display/QuantumDef.hbm.xml
10:28:00,081 INFO [HbmBinder] Mapping class:
ome.model.display.QuantumDef -> quantumdef
10:28:00,088 INFO [Configuration] Reading mappings from resource :
ome/model/acquisition/Detector.hbm.xml
10:28:00,108 INFO [HbmBinder] Mapping class:
ome.model.acquisition.Detector -> detector
10:28:00,116 INFO [Configuration] Reading mappings from resource :
ome/model/acquisition/OTF.hbm.xml
10:28:00,134 INFO [HbmBinder] Mapping class: ome.model.acquisition.OTF
-> otf
10:28:00,142 INFO [Configuration] Reading mappings from resource :
ome/model/enums/AberrationCorrection.hbm.xml
10:28:00,159 INFO [HbmBinder] Mapping class:
ome.model.enums.AberrationCorrection -> aberrationcorrection
10:28:00,165 INFO [Configuration] Reading mappings from resource :
ome/model/core/PixelsOriginalFileMap.hbm.xml
10:28:00,186 INFO [HbmBinder] Mapping class:
ome.model.core.PixelsOriginalFileMap -> pixelsoriginalfilemap
10:28:00,192 INFO [Configuration] Reading mappings from resource :
ome/model/results/NucleusMajorAxisLength.hbm.xml
10:28:00,211 INFO [HbmBinder] Mapping class:
ome.model.results.NucleusMajorAxisLength -> nucleusmajoraxislength
10:28:00,217 INFO [Configuration] Reading mappings from resource :
ome/model/results/NucleusExtent.hbm.xml
10:28:00,348 INFO [HbmBinder] Mapping class:
ome.model.results.NucleusExtent -> nucleusextent
10:28:00,354 INFO [Configuration] Reading mappings from resource :
ome/model/enums/PhotometricInterpretation.hbm.xml
10:28:00,373 INFO [HbmBinder] Mapping class:
ome.model.enums.PhotometricInterpretation -> photometricinterpretation
10:28:00,378 INFO [Configuration] Reading mappings from resource :
ome/model/enums/RegionType.hbm.xml
10:28:00,396 INFO [HbmBinder] Mapping class: ome.model.enums.RegionType
-> regiontype
10:28:00,402 INFO [Configuration] Reading mappings from resource :
ome/model/acquisition/Filter.hbm.xml
10:28:00,420 INFO [HbmBinder] Mapping class:
ome.model.acquisition.Filter -> filter
10:28:00,429 INFO [Configuration] Reading mappings from resource :
ome/model/enums/EventType.hbm.xml
10:28:00,448 INFO [HbmBinder] Mapping class: ome.model.enums.EventType
-> eventtype
10:28:00,453 INFO [Configuration] Reading mappings from resource :
ome/model/acquisition/CustomizedFilterSet.hbm.xml
10:28:00,680 INFO [HbmBinder] Mapping class:
ome.model.acquisition.CustomizedFilterSet -> customizedfilterset
10:28:00,688 INFO [Configuration] Reading mappings from resource :
ome/model/uroi/UShape.hbm.xml
10:28:00,706 INFO [HbmBinder] Mapping class: ome.model.uroi.UShape ->
ushape
10:28:00,712 INFO [Configuration] Reading mappings from resource :
ome/model/uroi/USquare.hbm.xml
10:28:00,727 INFO [HbmBinder] Mapping joined-subclass:
ome.model.uroi.USquare -> usquare
10:28:00,729 INFO [Configuration] Reading mappings from resource :
ome/model/containers/Category.hbm.xml
10:28:00,751 INFO [HbmBinder] Mapping class:
ome.model.containers.Category -> category
10:28:00,762 INFO [Configuration] Reading mappings from resource :
ome/model/enums/LaserMedium.hbm.xml
10:28:00,779 INFO [HbmBinder] Mapping class:
ome.model.enums.LaserMedium -> lasermedium
10:28:00,845 INFO [Configuration] Reading mappings from resource :
ome/model/enums/MicroscopeType.hbm.xml
10:28:00,897 INFO [HbmBinder] Mapping class:
ome.model.enums.MicroscopeType -> microscopetype
10:28:00,902 INFO [Configuration] Reading mappings from resource :
ome/model/acquisition/LightSettings.hbm.xml
10:28:00,921 INFO [HbmBinder] Mapping class:
ome.model.acquisition.LightSettings -> lightsettings
10:28:00,928 INFO [Configuration] Reading mappings from resource :
ome/model/enums/IrisDiaphragm.hbm.xml
10:28:00,945 INFO [HbmBinder] Mapping class:
ome.model.enums.IrisDiaphragm -> irisdiaphragm
10:28:00,950 INFO [Configuration] Reading mappings from resource :
ome/model/enums/DimensionOrder.hbm.xml
10:28:00,967 INFO [HbmBinder] Mapping class:
ome.model.enums.DimensionOrder -> dimensionorder
10:28:00,972 INFO [Configuration] Reading mappings from resource :
ome/model/enums/FrequencyMultiplication.hbm.xml
10:28:00,990 INFO [HbmBinder] Mapping class:
ome.model.enums.FrequencyMultiplication -> frequencymultiplication
10:28:00,995 INFO [Configuration] Reading mappings from resource :
ome/model/meta/Experimenter.hbm.xml
10:28:01,015 INFO [HbmBinder] Mapping class:
ome.model.meta.Experimenter -> experimenter
10:28:01,029 INFO [Configuration] Reading mappings from resource :
ome/model/annotations/DatasetAnnotation.hbm.xml
10:28:01,047 INFO [HbmBinder] Mapping class:
ome.model.annotations.DatasetAnnotation -> datasetannotation
10:28:01,053 INFO [Configuration] Reading mappings from resource :
ome/model/results/CellPerimeter.hbm.xml
10:28:01,071 INFO [HbmBinder] Mapping class:
ome.model.results.CellPerimeter -> cellperimeter
10:28:01,076 INFO [Configuration] Reading mappings from resource :
ome/model/results/CellMajorAxisLength.hbm.xml
10:28:01,259 INFO [HbmBinder] Mapping class:
ome.model.results.CellMajorAxisLength -> cellmajoraxislength
10:28:01,265 INFO [Configuration] Reading mappings from resource :
ome/model/jobs/JobOriginalFileLink.hbm.xml
10:28:01,282 INFO [HbmBinder] Mapping class:
ome.model.jobs.JobOriginalFileLink -> joboriginalfilelink
10:28:01,290 INFO [Configuration] Reading mappings from resource :
ome/model/uroi/XYZCtoXYCLink.hbm.xml
10:28:01,307 INFO [HbmBinder] Mapping class:
ome.model.uroi.XYZCtoXYCLink -> xyzctoxyclink
10:28:01,313 INFO [Configuration] Reading mappings from resource :
ome/model/uroi/BoundingBox.hbm.xml
10:28:01,609 INFO [HbmBinder] Mapping class: ome.model.uroi.BoundingBox
-> boundingbox
10:28:01,616 INFO [Configuration] Reading mappings from resource :
ome/model/uroi/XY.hbm.xml
10:28:01,632 INFO [HbmBinder] Mapping joined-subclass:
ome.model.uroi.XY -> xy
10:28:01,635 INFO [Configuration] Reading mappings from resource :
ome/model/uroi/XYC.hbm.xml
10:28:01,651 INFO [HbmBinder] Mapping joined-subclass:
ome.model.uroi.XYC -> xyc
10:28:01,655 INFO [Configuration] Reading mappings from resource :
ome/model/uroi/XYCT.hbm.xml
10:28:01,671 INFO [HbmBinder] Mapping joined-subclass:
ome.model.uroi.XYCT -> xyct
10:28:01,675 INFO [Configuration] Reading mappings from resource :
ome/model/uroi/XYT.hbm.xml
10:28:01,691 INFO [HbmBinder] Mapping joined-subclass:
ome.model.uroi.XYT -> xyt
10:28:01,695 INFO [Configuration] Reading mappings from resource :
ome/model/uroi/XYZ.hbm.xml
10:28:01,822 INFO [HbmBinder] Mapping joined-subclass:
ome.model.uroi.XYZ -> xyz
10:28:01,826 INFO [Configuration] Reading mappings from resource :
ome/model/uroi/XYZC.hbm.xml
10:28:01,846 INFO [HbmBinder] Mapping joined-subclass:
ome.model.uroi.XYZC -> xyzc
10:28:01,850 INFO [Configuration] Reading mappings from resource :
ome/model/uroi/XYZCT.hbm.xml
10:28:01,866 INFO [HbmBinder] Mapping joined-subclass:
ome.model.uroi.XYZCT -> xyzct
10:28:01,870 INFO [Configuration] Reading mappings from resource :
ome/model/uroi/XYZT.hbm.xml
10:28:01,888 INFO [HbmBinder] Mapping joined-subclass:
ome.model.uroi.XYZT -> xyzt
10:28:01,893 INFO [Configuration] Reading mappings from resource :
ome/model/core/Image.hbm.xml
10:28:01,915 INFO [HbmBinder] Mapping class: ome.model.core.Image -> image
10:28:01,935 INFO [Configuration] Reading mappings from resource :
ome/model/roi/ShapeArea.hbm.xml
10:28:01,950 INFO [HbmBinder] Mapping class: ome.model.roi.ShapeArea ->
shapearea
10:28:01,956 INFO [Configuration] Reading mappings from resource :
ome/model/roi/Square.hbm.xml
10:28:01,969 INFO [HbmBinder] Mapping joined-subclass:
ome.model.roi.Square -> square
10:28:01,970 INFO [Configuration] Reading mappings from resource :
ome/model/core/Channel.hbm.xml
10:28:02,097 INFO [HbmBinder] Mapping class: ome.model.core.Channel ->
channel
10:28:02,104 INFO [Configuration] Reading mappings from resource :
ome/model/enums/ExperimentType.hbm.xml
10:28:02,119 INFO [HbmBinder] Mapping class:
ome.model.enums.ExperimentType -> experimenttype
10:28:02,124 INFO [Configuration] Reading mappings from resource :
ome/model/uroi/USlice.hbm.xml
10:28:02,162 INFO [HbmBinder] Mapping class: ome.model.uroi.USlice ->
uslice
10:28:02,170 INFO [Configuration] Reading mappings from resource :
ome/model/results/NucleusArea.hbm.xml
10:28:02,185 INFO [HbmBinder] Mapping class:
ome.model.results.NucleusArea -> nucleusarea
10:28:02,190 INFO [Configuration] Reading mappings from resource :
ome/model/meta/ExternalInfo.hbm.xml
10:28:02,205 INFO [HbmBinder] Mapping class:
ome.model.meta.ExternalInfo -> externalinfo
10:28:02,211 INFO [Configuration] Reading mappings from resource :
ome/model/acquisition/Instrument.hbm.xml
10:28:02,260 INFO [HbmBinder] Mapping class:
ome.model.acquisition.Instrument -> instrument
10:28:02,275 INFO [Configuration] Reading mappings from resource :
ome/model/core/PlaneInfo.hbm.xml
10:28:02,363 INFO [HbmBinder] Mapping class: ome.model.core.PlaneInfo
-> planeinfo
10:28:02,381 INFO [Configuration] Reading mappings from resource :
ome/model/meta/EventLog.hbm.xml
10:28:02,394 INFO [HbmBinder] Mapping class: ome.model.meta.EventLog ->
eventlog
10:28:02,397 INFO [Configuration] Reading mappings from resource :
ome/model/uroi/Specification.hbm.xml
10:28:02,413 INFO [HbmBinder] Mapping class:
ome.model.uroi.Specification -> specification
10:28:02,418 INFO [Configuration] Reading mappings from resource :
ome/model/uroi/URoi.hbm.xml
10:28:02,435 INFO [HbmBinder] Mapping joined-subclass:
ome.model.uroi.URoi -> uroi
10:28:02,439 INFO [Configuration] Reading mappings from resource :
ome/model/uroi/Overlay.hbm.xml
10:28:02,460 INFO [HbmBinder] Mapping joined-subclass:
ome.model.uroi.Overlay -> overlay
10:28:02,463 INFO [Configuration] Reading mappings from resource :
ome/model/acquisition/Objective.hbm.xml
10:28:02,478 INFO [HbmBinder] Mapping class:
ome.model.acquisition.Objective -> objective
10:28:02,491 INFO [Configuration] Reading mappings from resource :
ome/model/uroi/Region.hbm.xml
10:28:02,584 INFO [HbmBinder] Mapping class: ome.model.uroi.Region ->
region
10:28:02,597 INFO [Configuration] Reading mappings from resource :
ome/model/results/NucleusSolidity.hbm.xml
10:28:02,611 INFO [HbmBinder] Mapping class:
ome.model.results.NucleusSolidity -> nucleussolidity
10:28:02,624 INFO [Configuration] Reading mappings from resource :
ome/model/roi/RoiExtent.hbm.xml
10:28:02,641 INFO [HbmBinder] Mapping class: ome.model.roi.RoiExtent ->
roiextent
10:28:02,649 INFO [Configuration] Reading mappings from resource :
ome/model/enums/ContrastMethod.hbm.xml
10:28:02,663 INFO [HbmBinder] Mapping class:
ome.model.enums.ContrastMethod -> contrastmethod
10:28:02,668 INFO [Configuration] Reading mappings from resource :
ome/model/enums/FilamentType.hbm.xml
10:28:02,682 INFO [HbmBinder] Mapping class:
ome.model.enums.FilamentType -> filamenttype
10:28:02,687 INFO [Configuration] Reading mappings from resource :
ome/model/meta/DBPatch.hbm.xml
10:28:02,700 INFO [HbmBinder] Mapping class: ome.model.meta.DBPatch ->
dbpatch
10:28:02,703 INFO [Configuration] Reading mappings from resource :
ome/model/results/ImageCellCount.hbm.xml
10:28:02,717 INFO [HbmBinder] Mapping class:
ome.model.results.ImageCellCount -> imagecellcount
10:28:02,723 INFO [Configuration] Reading mappings from resource :
ome/model/containers/Dataset.hbm.xml
10:28:02,741 INFO [HbmBinder] Mapping class:
ome.model.containers.Dataset -> dataset
10:28:02,751 INFO [Configuration] Reading mappings from resource :
ome/model/enums/FilterType.hbm.xml
10:28:02,765 INFO [HbmBinder] Mapping class: ome.model.enums.FilterType
-> filtertype
10:28:02,770 INFO [Configuration] Reading mappings from resource :
ome/model/results/NucleusPosition.hbm.xml
10:28:02,785 INFO [HbmBinder] Mapping class:
ome.model.results.NucleusPosition -> nucleusposition
10:28:02,791 INFO [Configuration] Reading mappings from resource :
ome/model/annotations/ProjectAnnotation.hbm.xml
10:28:02,807 INFO [HbmBinder] Mapping class:
ome.model.annotations.ProjectAnnotation -> projectannotation
10:28:02,813 INFO [Configuration] Configured SessionFactory: null
10:28:02,823 INFO [LocalSessionFactoryBean] Building new Hibernate
SessionFactory
10:28:02,855 INFO [HbmBinder] Mapping collection:
ome.model.roi.Roi5D.roiMaps -> roimap
10:28:02,856 INFO [HbmBinder] Mapping collection:
ome.model.roi.Roi5D.extents -> roiextent
10:28:02,857 INFO [HbmBinder] Mapping collection:
ome.model.core.Pixels.planeInfo -> planeinfo
10:28:02,857 INFO [HbmBinder] Mapping collection:
ome.model.core.Pixels.pixelsFileMaps -> pixelsoriginalfilemap
10:28:02,858 INFO [HbmBinder] Mapping collection:
ome.model.core.Pixels.channels -> channel
10:28:02,861 INFO [HbmBinder] Mapping collection:
ome.model.core.Pixels.settings -> renderingdef
10:28:02,861 INFO [HbmBinder] Mapping collection:
ome.model.core.Pixels.thumbnails -> thumbnail
10:28:02,884 INFO [HbmBinder] Mapping collection:
ome.model.meta.ExperimenterGroup.groupExperimenterMap ->
groupexperimentermap
10:28:02,885 INFO [HbmBinder] Mapping collection:
ome.model.meta.Event.logs -> eventlog
10:28:02,885 INFO [HbmBinder] Mapping collection:
ome.model.core.OriginalFile.pixelsFileMaps -> pixelsoriginalfilemap
10:28:02,886 INFO [HbmBinder] Mapping collection:
ome.model.display.RenderingDef.waveRendering -> channelbinding
10:28:02,886 INFO [HbmBinder] Mapping collection:
ome.model.display.RenderingDef.spatialDomainEnhancement ->
codomainmapcontext
10:28:02,887 INFO [HbmBinder] Mapping collection:
ome.model.containers.Project.datasetLinks -> projectdatasetlink
10:28:02,887 INFO [HbmBinder] Mapping collection:
ome.model.containers.Project.annotations -> projectannotation
10:28:02,889 INFO [HbmBinder] Mapping collection:
ome.model.roi.RoiSet.roiMaps -> roimap
10:28:02,890 INFO [HbmBinder] Mapping collection:
ome.model.containers.CategoryGroup.categoryLinks ->
categorygroupcategorylink
10:28:02,890 INFO [HbmBinder] Mapping collection:
ome.model.jobs.ImportJob.originalFileLinks -> joboriginalfilelink
10:28:02,890 INFO [HbmBinder] Mapping collection:
ome.model.containers.Category.categoryGroupLinks ->
categorygroupcategorylink
10:28:02,891 INFO [HbmBinder] Mapping collection:
ome.model.containers.Category.imageLinks -> categoryimagelink
10:28:02,891 INFO [HbmBinder] Mapping collection:
ome.model.meta.Experimenter.groupExperimenterMap -> groupexperimentermap
10:28:02,892 INFO [HbmBinder] Mapping collection:
ome.model.uroi.XY.xyzLinks -> xyztoxylink
10:28:02,892 INFO [HbmBinder] Mapping collection:
ome.model.uroi.XY.xycLinks -> xyctoxylink
10:28:02,893 INFO [HbmBinder] Mapping collection:
ome.model.uroi.XY.xytLinks -> xyttoxylink
10:28:02,893 INFO [HbmBinder] Mapping collection:
ome.model.uroi.XYC.xyzcLinks -> xyzctoxyclink
10:28:02,894 INFO [HbmBinder] Mapping collection:
ome.model.uroi.XYC.xyctLinks -> xycttoxyclink
10:28:02,894 INFO [HbmBinder] Mapping collection:
ome.model.uroi.XYC.xyLinks -> xyctoxylink
10:28:02,895 INFO [HbmBinder] Mapping collection:
ome.model.uroi.XYCT.xyzctLinks -> xyzcttoxyctlink
10:28:02,895 INFO [HbmBinder] Mapping collection:
ome.model.uroi.XYCT.xycLinks -> xycttoxyclink
10:28:02,896 INFO [HbmBinder] Mapping collection:
ome.model.uroi.XYCT.xytLinks -> xycttoxytlink
10:28:02,896 INFO [HbmBinder] Mapping collection:
ome.model.uroi.XYT.xyztLinks -> xyzttoxytlink
10:28:02,897 INFO [HbmBinder] Mapping collection:
ome.model.uroi.XYT.xyctLinks -> xycttoxytlink
10:28:02,897 INFO [HbmBinder] Mapping collection:
ome.model.uroi.XYT.xyLinks -> xyttoxylink
10:28:02,897 INFO [HbmBinder] Mapping collection:
ome.model.uroi.XYZ.xyzcLinks -> xyzctoxyzlink
10:28:02,898 INFO [HbmBinder] Mapping collection:
ome.model.uroi.XYZ.xyztLinks -> xyzttoxyzlink
10:28:02,898 INFO [HbmBinder] Mapping collection:
ome.model.uroi.XYZ.xyLinks -> xyztoxylink
10:28:02,899 INFO [HbmBinder] Mapping collection:
ome.model.uroi.XYZC.xyzctLinks -> xyzcttoxyzclink
10:28:02,899 INFO [HbmBinder] Mapping collection:
ome.model.uroi.XYZC.xyzLinks -> xyzctoxyzlink
10:28:02,900 INFO [HbmBinder] Mapping collection:
ome.model.uroi.XYZC.xycLinks -> xyzctoxyclink
10:28:02,900 INFO [HbmBinder] Mapping collection:
ome.model.uroi.XYZCT.xyzcLinks -> xyzcttoxyzclink
10:28:02,901 INFO [HbmBinder] Mapping collection:
ome.model.uroi.XYZCT.xyztLinks -> xyzcttoxyztlink
10:28:02,901 INFO [HbmBinder] Mapping collection:
ome.model.uroi.XYZCT.xyctLinks -> xyzcttoxyctlink
10:28:02,902 INFO [HbmBinder] Mapping collection:
ome.model.uroi.XYZT.xyzctLinks -> xyzcttoxyztlink
10:28:02,902 INFO [HbmBinder] Mapping collection:
ome.model.uroi.XYZT.xyzLinks -> xyzttoxyzlink
10:28:02,903 INFO [HbmBinder] Mapping collection:
ome.model.uroi.XYZT.xytLinks -> xyzttoxytlink
10:28:02,903 INFO [HbmBinder] Mapping collection:
ome.model.core.Image.pixels -> pixels
10:28:02,904 INFO [HbmBinder] Mapping collection:
ome.model.core.Image.categoryLinks -> categoryimagelink
10:28:02,904 INFO [HbmBinder] Mapping collection:
ome.model.core.Image.datasetLinks -> datasetimagelink
10:28:02,904 INFO [HbmBinder] Mapping collection:
ome.model.core.Image.annotations -> imageannotation
10:28:02,905 INFO [HbmBinder] Mapping collection:
ome.model.uroi.USlice.shapes -> ushape
10:28:02,905 INFO [HbmBinder] Mapping collection:
ome.model.acquisition.Instrument.detector -> detector
10:28:02,906 INFO [HbmBinder] Mapping collection:
ome.model.acquisition.Instrument.objective -> objective
10:28:02,906 INFO [HbmBinder] Mapping collection:
ome.model.acquisition.Instrument.lightSource -> lightsource
10:28:02,907 INFO [HbmBinder] Mapping collection:
ome.model.acquisition.Instrument.filter -> filter
10:28:02,907 INFO [HbmBinder] Mapping collection:
ome.model.uroi.URoi.slices -> uslice
10:28:02,908 INFO [HbmBinder] Mapping collection:
ome.model.uroi.Region.boxes -> boundingbox
10:28:02,908 INFO [HbmBinder] Mapping collection:
ome.model.uroi.Region.metadata -> metadata
10:28:02,909 INFO [HbmBinder] Mapping collection:
ome.model.uroi.Region.specs -> specification
10:28:02,909 INFO [HbmBinder] Mapping collection:
ome.model.roi.RoiExtent.shapes -> shapearea
10:28:02,909 INFO [HbmBinder] Mapping collection:
ome.model.containers.Dataset.projectLinks -> projectdatasetlink
10:28:02,910 INFO [HbmBinder] Mapping collection:
ome.model.containers.Dataset.imageLinks -> datasetimagelink
10:28:02,910 INFO [HbmBinder] Mapping collection:
ome.model.containers.Dataset.annotations -> datasetannotation
10:28:03,756 INFO [ConnectionProviderFactory] Initializing connection
provider:
org.springframework.orm.hibernate3.LocalDataSourceConnectionProvider
10:28:03,783 WARN [JBossManagedConnectionPool] Throwable while
attempting to get a new connection: null
org.jboss.resource.JBossResourceException: Could not create connection;
- nested throwable: (org.jboss.resource.JBossResourceException:
Apparently wrong driver class specified for URL: class:
org.postgresql.Driver, url: jdbc:postgresql://localhost/omero3)
at
org.jboss.resource.adapter.jdbc.local.LocalManagedConnectionFactory.createManagedConnection(LocalManagedConnectionFactory.java:177)
at
org.jboss.resource.connectionmanager.InternalManagedConnectionPool.createConnectionEventListener(InternalManagedConnectionPool.java:539)
at
org.jboss.resource.connectionmanager.InternalManagedConnectionPool.getConnection(InternalManagedConnectionPool.java:228)
at
org.jboss.resource.connectionmanager.JBossManagedConnectionPool$BasePool.getConnection(JBossManagedConnectionPool.java:417)
at
org.jboss.resource.connectionmanager.BaseConnectionManager2.getManagedConnection(BaseConnectionManager2.java:324)
at
org.jboss.resource.connectionmanager.TxConnectionManager.getManagedConnection(TxConnectionManager.java:301)
at
org.jboss.resource.connectionmanager.BaseConnectionManager2.allocateConnection(BaseConnectionManager2.java:379)
at
org.jboss.resource.connectionmanager.BaseConnectionManager2$ConnectionManagerProxy.allocateConnection(BaseConnectionManager2.java:812)
at
org.jboss.resource.adapter.jdbc.WrapperDataSource.getConnection(WrapperDataSource.java:88)
at
org.springframework.orm.hibernate3.LocalDataSourceConnectionProvider.getConnection(LocalDataSourceConnectionProvider.java:81)
at
org.hibernate.cfg.SettingsFactory.buildSettings(SettingsFactory.java:84)
at
org.hibernate.cfg.Configuration.buildSettings(Configuration.java:2009)
at
org.hibernate.cfg.Configuration.buildSessionFactory(Configuration.java:1292)
at
org.springframework.orm.hibernate3.LocalSessionFactoryBean.newSessionFactory(LocalSessionFactoryBean.java:798)
at
org.springframework.orm.hibernate3.LocalSessionFactoryBean.buildSessionFactory(LocalSessionFactoryBean.java:738)
at
org.springframework.orm.hibernate3.AbstractSessionFactoryBean.afterPropertiesSet(AbstractSessionFactoryBean.java:131)
at
org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.invokeInitMethods(AbstractAutowireCapableBeanFactory.java:1057)
at
org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.initializeBean(AbstractAutowireCapableBeanFactory.java:1024)
at
org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.createBean(AbstractAutowireCapableBeanFactory.java:421)
at
org.springframework.beans.factory.support.AbstractBeanFactory$1.getObject(AbstractBeanFactory.java:245)
at
org.springframework.beans.factory.support.DefaultSingletonBeanRegistry.getSingleton(DefaultSingletonBeanRegistry.java:140)
at
org.springframework.beans.factory.support.AbstractBeanFactory.getBean(AbstractBeanFactory.java:242)
at
org.springframework.beans.factory.support.AbstractBeanFactory.getBean(AbstractBeanFactory.java:156)
at
org.springframework.beans.factory.support.BeanDefinitionValueResolver.resolveReference(BeanDefinitionValueResolver.java:248)
at
org.springframework.beans.factory.support.BeanDefinitionValueResolver.resolveValueIfNecessary(BeanDefinitionValueResolver.java:128)
at
org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.applyPropertyValues(AbstractAutowireCapableBeanFactory.java:950)
at
org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.populateBean(AbstractAutowireCapableBeanFactory.java:740)
at
org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.createBean(AbstractAutowireCapableBeanFactory.java:417)
at
org.springframework.beans.factory.support.AbstractBeanFactory$1.getObject(AbstractBeanFactory.java:245)
at
org.springframework.beans.factory.support.DefaultSingletonBeanRegistry.getSingleton(DefaultSingletonBeanRegistry.java:140)
at
org.springframework.beans.factory.support.AbstractBeanFactory.getBean(AbstractBeanFactory.java:242)
at
org.springframework.beans.factory.support.AbstractBeanFactory.getBean(AbstractBeanFactory.java:156)
at
org.springframework.beans.factory.support.BeanDefinitionValueResolver.resolveReference(BeanDefinitionValueResolver.java:248)
at
org.springframework.beans.factory.support.BeanDefinitionValueResolver.resolveValueIfNecessary(BeanDefinitionValueResolver.java:128)
at
org.springframework.beans.factory.support.ConstructorResolver.resolveConstructorArguments(ConstructorResolver.java:329)
at
org.springframework.beans.factory.support.ConstructorResolver.autowireConstructor(ConstructorResolver.java:97)
at
org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.autowireConstructor(AbstractAutowireCapableBeanFactory.java:684)
at
org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.createBeanInstance(AbstractAutowireCapableBeanFactory.java:622)
at
org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.createBean(AbstractAutowireCapableBeanFactory.java:381)
at
org.springframework.beans.factory.support.AbstractBeanFactory$1.getObject(AbstractBeanFactory.java:245)
at
org.springframework.beans.factory.support.DefaultSingletonBeanRegistry.getSingleton(DefaultSingletonBeanRegistry.java:140)
at
org.springframework.beans.factory.support.AbstractBeanFactory.getBean(AbstractBeanFactory.java:242)
at
org.springframework.beans.factory.support.AbstractBeanFactory.getBean(AbstractBeanFactory.java:156)
at
org.springframework.beans.factory.support.DefaultListableBeanFactory.preInstantiateSingletons(DefaultListableBeanFactory.java:273)
at
org.springframework.context.support.AbstractApplicationContext.refresh(AbstractApplicationContext.java:346)
at
org.springframework.context.support.ClassPathXmlApplicationContext.<init>(ClassPathXmlApplicationContext.java:125)
at
org.springframework.context.support.ClassPathXmlApplicationContext.<init>(ClassPathXmlApplicationContext.java:106)
at ome.system.OmeroContext.<init>(OmeroContext.java:80)
at sun.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method)
at
sun.reflect.NativeConstructorAccessorImpl.newInstance(NativeConstructorAccessorImpl.java:39)
at
sun.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:27)
at java.lang.reflect.Constructor.newInstance(Constructor.java:513)
at
org.springframework.beans.BeanUtils.instantiateClass(BeanUtils.java:84)
at
org.springframework.beans.factory.support.SimpleInstantiationStrategy.instantiate(SimpleInstantiationStrategy.java:78)
at
org.springframework.beans.factory.support.ConstructorResolver.autowireConstructor(ConstructorResolver.java:156)
at
org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.autowireConstructor(AbstractAutowireCapableBeanFactory.java:684)
at
org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.createBeanInstance(AbstractAutowireCapableBeanFactory.java:622)
at
org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.createBean(AbstractAutowireCapableBeanFactory.java:381)
at
org.springframework.beans.factory.support.AbstractBeanFactory$1.getObject(AbstractBeanFactory.java:245)
at
org.springframework.beans.factory.support.DefaultSingletonBeanRegistry.getSingleton(DefaultSingletonBeanRegistry.java:140)
at
org.springframework.beans.factory.support.AbstractBeanFactory.getBean(AbstractBeanFactory.java:242)
at
org.springframework.beans.factory.support.AbstractBeanFactory.getBean(AbstractBeanFactory.java:156)
at
org.springframework.context.support.AbstractApplicationContext.getBean(AbstractApplicationContext.java:640)
at
org.springframework.beans.factory.access.SingletonBeanFactoryLocator.useBeanFactory(SingletonBeanFactoryLocator.java:393)
at ome.system.OmeroContext.getInstance(OmeroContext.java:192)
at
ome.system.OmeroContext.getManagedServerContext(OmeroContext.java:174)
at ome.services.jboss.OmeroContextHook.<init>(OmeroContextHook.java:40)
at sun.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method)
at
sun.reflect.NativeConstructorAccessorImpl.newInstance(NativeConstructorAccessorImpl.java:39)
at
sun.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:27)
at java.lang.reflect.Constructor.newInstance(Constructor.java:513)
at org.jboss.ejb3.EJBContainer.construct(EJBContainer.java:459)
at
org.jboss.ejb3.service.ServiceContainer.start(ServiceContainer.java:104)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at
sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:39)
at
sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25)
at java.lang.reflect.Method.invoke(Method.java:597)
at
org.jboss.ejb3.ServiceDelegateWrapper.startService(ServiceDelegateWrapper.java:99)
at
org.jboss.system.ServiceMBeanSupport.jbossInternalStart(ServiceMBeanSupport.java:289)
at
org.jboss.system.ServiceMBeanSupport.jbossInternalLifecycle(ServiceMBeanSupport.java:245)
at sun.reflect.GeneratedMethodAccessor3.invoke(Unknown Source)
at
sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25)
at java.lang.reflect.Method.invoke(Method.java:597)
at
org.jboss.mx.interceptor.ReflectedDispatcher.invoke(ReflectedDispatcher.java:155)
at org.jboss.mx.server.Invocation.dispatch(Invocation.java:94)
at org.jboss.mx.server.Invocation.invoke(Invocation.java:86)
at
org.jboss.mx.server.AbstractMBeanInvoker.invoke(AbstractMBeanInvoker.java:264)
at org.jboss.mx.server.MBeanServerImpl.invoke(MBeanServerImpl.java:659)
at
org.jboss.system.ServiceController$ServiceProxy.invoke(ServiceController.java:978)
at $Proxy0.start(Unknown Source)
at org.jboss.system.ServiceController.start(ServiceController.java:417)
at sun.reflect.GeneratedMethodAccessor6.invoke(Unknown Source)
at
sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25)
at java.lang.reflect.Method.invoke(Method.java:597)
at
org.jboss.mx.interceptor.ReflectedDispatcher.invoke(ReflectedDispatcher.java:155)
at org.jboss.mx.server.Invocation.dispatch(Invocation.java:94)
at org.jboss.mx.server.Invocation.invoke(Invocation.java:86)
at
org.jboss.mx.server.AbstractMBeanInvoker.invoke(AbstractMBeanInvoker.java:264)
at org.jboss.mx.server.MBeanServerImpl.invoke(MBeanServerImpl.java:659)
at org.jboss.mx.util.MBeanProxyExt.invoke(MBeanProxyExt.java:210)
at $Proxy49.start(Unknown Source)
at
org.jboss.ejb3.JmxKernelAbstraction.install(JmxKernelAbstraction.java:82)
at
org.jboss.ejb3.Ejb3Deployment.registerEJBContainer(Ejb3Deployment.java:439)
at org.jboss.ejb3.Ejb3Deployment.start(Ejb3Deployment.java:486)
at org.jboss.ejb3.Ejb3Module.startService(Ejb3Module.java:139)
at
org.jboss.system.ServiceMBeanSupport.jbossInternalStart(ServiceMBeanSupport.java:289)
at
org.jboss.system.ServiceMBeanSupport.jbossInternalLifecycle(ServiceMBeanSupport.java:245)
at sun.reflect.GeneratedMethodAccessor3.invoke(Unknown Source)
at
sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25)
at java.lang.reflect.Method.invoke(Method.java:597)
at
org.jboss.mx.interceptor.ReflectedDispatcher.invoke(ReflectedDispatcher.java:155)
at org.jboss.mx.server.Invocation.dispatch(Invocation.java:94)
at org.jboss.mx.server.Invocation.invoke(Invocation.java:86)
at
org.jboss.mx.server.AbstractMBeanInvoker.invoke(AbstractMBeanInvoker.java:264)
at org.jboss.mx.server.MBeanServerImpl.invoke(MBeanServerImpl.java:659)
at
org.jboss.system.ServiceController$ServiceProxy.invoke(ServiceController.java:978)
at $Proxy0.start(Unknown Source)
at org.jboss.system.ServiceController.start(ServiceController.java:417)
at sun.reflect.GeneratedMethodAccessor6.invoke(Unknown Source)
at
sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25)
at java.lang.reflect.Method.invoke(Method.java:597)
at
org.jboss.mx.interceptor.ReflectedDispatcher.invoke(ReflectedDispatcher.java:155)
at org.jboss.mx.server.Invocation.dispatch(Invocation.java:94)
at org.jboss.mx.server.Invocation.invoke(Invocation.java:86)
at
org.jboss.mx.server.AbstractMBeanInvoker.invoke(AbstractMBeanInvoker.java:264)
at org.jboss.mx.server.MBeanServerImpl.invoke(MBeanServerImpl.java:659)
at org.jboss.mx.util.MBeanProxyExt.invoke(MBeanProxyExt.java:210)
at $Proxy34.start(Unknown Source)
at org.jboss.ejb3.EJB3Deployer.start(EJB3Deployer.java:449)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at
sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:39)
at
sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25)
at java.lang.reflect.Method.invoke(Method.java:597)
at
org.jboss.mx.interceptor.ReflectedDispatcher.invoke(ReflectedDispatcher.java:155)
at org.jboss.mx.server.Invocation.dispatch(Invocation.java:94)
at
org.jboss.mx.interceptor.AbstractInterceptor.invoke(AbstractInterceptor.java:133)
at org.jboss.mx.server.Invocation.invoke(Invocation.java:88)
at
org.jboss.mx.interceptor.ModelMBeanOperationInterceptor.invoke(ModelMBeanOperationInterceptor.java:142)
at
org.jboss.mx.interceptor.DynamicInterceptor.invoke(DynamicInterceptor.java:97)
at
org.jboss.system.InterceptorServiceMBeanSupport.invokeNext(InterceptorServiceMBeanSupport.java:238)
at
org.jboss.ws.server.WebServiceDeployer.start(WebServiceDeployer.java:117)
at
org.jboss.deployment.SubDeployerInterceptorSupport$XMBeanInterceptor.start(SubDeployerInterceptorSupport.java:188)
at
org.jboss.deployment.SubDeployerInterceptor.invoke(SubDeployerInterceptor.java:95)
at org.jboss.mx.server.Invocation.invoke(Invocation.java:88)
at
org.jboss.mx.server.AbstractMBeanInvoker.invoke(AbstractMBeanInvoker.java:264)
at org.jboss.mx.server.MBeanServerImpl.invoke(MBeanServerImpl.java:659)
at org.jboss.mx.util.MBeanProxyExt.invoke(MBeanProxyExt.java:210)
at $Proxy35.start(Unknown Source)
at org.jboss.deployment.MainDeployer.start(MainDeployer.java:1007)
at org.jboss.deployment.MainDeployer.start(MainDeployer.java:997)
at org.jboss.deployment.MainDeployer.deploy(MainDeployer.java:808)
at org.jboss.deployment.MainDeployer.deploy(MainDeployer.java:771)
at sun.reflect.GeneratedMethodAccessor14.invoke(Unknown Source)
at
sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25)
at java.lang.reflect.Method.invoke(Method.java:597)
at
org.jboss.mx.interceptor.ReflectedDispatcher.invoke(ReflectedDispatcher.java:155)
at org.jboss.mx.server.Invocation.dispatch(Invocation.java:94)
at
org.jboss.mx.interceptor.AbstractInterceptor.invoke(AbstractInterceptor.java:133)
at org.jboss.mx.server.Invocation.invoke(Invocation.java:88)
at
org.jboss.mx.interceptor.ModelMBeanOperationInterceptor.invoke(ModelMBeanOperationInterceptor.java:142)
at org.jboss.mx.server.Invocation.invoke(Invocation.java:88)
at
org.jboss.mx.server.AbstractMBeanInvoker.invoke(AbstractMBeanInvoker.java:264)
at org.jboss.mx.server.MBeanServerImpl.invoke(MBeanServerImpl.java:659)
at org.jboss.mx.util.MBeanProxyExt.invoke(MBeanProxyExt.java:210)
at $Proxy6.deploy(Unknown Source)
at
org.jboss.deployment.scanner.URLDeploymentScanner.deploy(URLDeploymentScanner.java:421)
at
org.jboss.deployment.scanner.URLDeploymentScanner.scan(URLDeploymentScanner.java:634)
at
org.jboss.deployment.scanner.AbstractDeploymentScanner$ScannerThread.doScan(AbstractDeploymentScanner.java:263)
at
org.jboss.deployment.scanner.AbstractDeploymentScanner.startService(AbstractDeploymentScanner.java:336)
at
org.jboss.system.ServiceMBeanSupport.jbossInternalStart(ServiceMBeanSupport.java:289)
at
org.jboss.system.ServiceMBeanSupport.jbossInternalLifecycle(ServiceMBeanSupport.java:245)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at
sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:39)
at
sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25)
at java.lang.reflect.Method.invoke(Method.java:597)
at
org.jboss.mx.interceptor.ReflectedDispatcher.invoke(ReflectedDispatcher.java:155)
at org.jboss.mx.server.Invocation.dispatch(Invocation.java:94)
at org.jboss.mx.server.Invocation.invoke(Invocation.java:86)
at
org.jboss.mx.server.AbstractMBeanInvoker.invoke(AbstractMBeanInvoker.java:264)
at org.jboss.mx.server.MBeanServerImpl.invoke(MBeanServerImpl.java:659)
at
org.jboss.system.ServiceController$ServiceProxy.invoke(ServiceController.java:978)
at $Proxy0.start(Unknown Source)
at org.jboss.system.ServiceController.start(ServiceController.java:417)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at
sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:39)
at
sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25)
at java.lang.reflect.Method.invoke(Method.java:597)
at
org.jboss.mx.interceptor.ReflectedDispatcher.invoke(ReflectedDispatcher.java:155)
at org.jboss.mx.server.Invocation.dispatch(Invocation.java:94)
at org.jboss.mx.server.Invocation.invoke(Invocation.java:86)
at
org.jboss.mx.server.AbstractMBeanInvoker.invoke(AbstractMBeanInvoker.java:264)
at org.jboss.mx.server.MBeanServerImpl.invoke(MBeanServerImpl.java:659)
at org.jboss.mx.util.MBeanProxyExt.invoke(MBeanProxyExt.java:210)
at $Proxy4.start(Unknown Source)
at org.jboss.deployment.SARDeployer.start(SARDeployer.java:302)
at org.jboss.deployment.MainDeployer.start(MainDeployer.java:1007)
at org.jboss.deployment.MainDeployer.deploy(MainDeployer.java:808)
at org.jboss.deployment.MainDeployer.deploy(MainDeployer.java:771)
at org.jboss.deployment.MainDeployer.deploy(MainDeployer.java:755)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at
sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:39)
at
sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25)
at java.lang.reflect.Method.invoke(Method.java:597)
at
org.jboss.mx.interceptor.ReflectedDispatcher.invoke(ReflectedDispatcher.java:155)
at org.jboss.mx.server.Invocation.dispatch(Invocation.java:94)
at
org.jboss.mx.interceptor.AbstractInterceptor.invoke(AbstractInterceptor.java:133)
at org.jboss.mx.server.Invocation.invoke(Invocation.java:88)
at
org.jboss.mx.interceptor.ModelMBeanOperationInterceptor.invoke(ModelMBeanOperationInterceptor.java:142)
at org.jboss.mx.server.Invocation.invoke(Invocation.java:88)
at
org.jboss.mx.server.AbstractMBeanInvoker.invoke(AbstractMBeanInvoker.java:264)
at org.jboss.mx.server.MBeanServerImpl.invoke(MBeanServerImpl.java:659)
at org.jboss.mx.util.MBeanProxyExt.invoke(MBeanProxyExt.java:210)
at $Proxy5.deploy(Unknown Source)
at org.jboss.system.server.ServerImpl.doStart(ServerImpl.java:482)
at org.jboss.system.server.ServerImpl.start(ServerImpl.java:362)
at org.jboss.Main.boot(Main.java:200)
at org.jboss.Main$1.run(Main.java:464)
at java.lang.Thread.run(Thread.java:619)
Caused by: org.jboss.resource.JBossResourceException: Apparently wrong
driver class specified for URL: class: org.postgresql.Driver, url:
jdbc:postgresql://localhost/omero3
at
org.jboss.resource.adapter.jdbc.local.LocalManagedConnectionFactory.getDriver(LocalManagedConnectionFactory.java:274)
at
org.jboss.resource.adapter.jdbc.local.LocalManagedConnectionFactory.createManagedConnection(LocalManagedConnectionFactory.java:168)
... 217 more
10:28:03,803 WARN [JDBCExceptionReporter] SQL Error: 0, SQLState: null
10:28:03,803 ERROR [JDBCExceptionReporter] Could not create connection;
- nested throwable: (org.jboss.resource.JBossResourceException:
Apparently wrong driver class specified for URL: class:
org.postgresql.Driver, url: jdbc:postgresql://localhost/omero3); -
nested throwable: (org.jboss.resource.JBossResourceException: Could not
create connection; - nested throwable:
(org.jboss.resource.JBossResourceException: Apparently wrong driver
class specified for URL: class: org.postgresql.Driver, url:
jdbc:postgresql://localhost/omero3))
10:28:03,803 WARN [SettingsFactory] Could not obtain connection metadata
org.jboss.util.NestedSQLException: Could not create connection; - nested
throwable: (org.jboss.resource.JBossResourceException: Apparently wrong
driver class specified for URL: class: org.postgresql.Driver, url:
jdbc:postgresql://localhost/omero3); - nested throwable:
(org.jboss.resource.JBossResourceException: Could not create connection;
- nested throwable: (org.jboss.resource.JBossResourceException:
Apparently wrong driver class specified for URL: class:
org.postgresql.Driver, url: jdbc:postgresql://localhost/omero3))
at
org.jboss.resource.adapter.jdbc.WrapperDataSource.getConnection(WrapperDataSource.java:94)
at
org.springframework.orm.hibernate3.LocalDataSourceConnectionProvider.getConnection(LocalDataSourceConnectionProvider.java:81)
at
org.hibernate.cfg.SettingsFactory.buildSettings(SettingsFactory.java:84)
at
org.hibernate.cfg.Configuration.buildSettings(Configuration.java:2009)
at
org.hibernate.cfg.Configuration.buildSessionFactory(Configuration.java:1292)
at
org.springframework.orm.hibernate3.LocalSessionFactoryBean.newSessionFactory(LocalSessionFactoryBean.java:798)
at
org.springframework.orm.hibernate3.LocalSessionFactoryBean.buildSessionFactory(LocalSessionFactoryBean.java:738)
at
org.springframework.orm.hibernate3.AbstractSessionFactoryBean.afterPropertiesSet(AbstractSessionFactoryBean.java:131)
at
org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.invokeInitMethods(AbstractAutowireCapableBeanFactory.java:1057)
at
org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.initializeBean(AbstractAutowireCapableBeanFactory.java:1024)
at
org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.createBean(AbstractAutowireCapableBeanFactory.java:421)
at
org.springframework.beans.factory.support.AbstractBeanFactory$1.getObject(AbstractBeanFactory.java:245)
at
org.springframework.beans.factory.support.DefaultSingletonBeanRegistry.getSingleton(DefaultSingletonBeanRegistry.java:140)
at
org.springframework.beans.factory.support.AbstractBeanFactory.getBean(AbstractBeanFactory.java:242)
at
org.springframework.beans.factory.support.AbstractBeanFactory.getBean(AbstractBeanFactory.java:156)
at
org.springframework.beans.factory.support.BeanDefinitionValueResolver.resolveReference(BeanDefinitionValueResolver.java:248)
at
org.springframework.beans.factory.support.BeanDefinitionValueResolver.resolveValueIfNecessary(BeanDefinitionValueResolver.java:128)
at
org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.applyPropertyValues(AbstractAutowireCapableBeanFactory.java:950)
at
org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.populateBean(AbstractAutowireCapableBeanFactory.java:740)
at
org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.createBean(AbstractAutowireCapableBeanFactory.java:417)
at
org.springframework.beans.factory.support.AbstractBeanFactory$1.getObject(AbstractBeanFactory.java:245)
at
org.springframework.beans.factory.support.DefaultSingletonBeanRegistry.getSingleton(DefaultSingletonBeanRegistry.java:140)
at
org.springframework.beans.factory.support.AbstractBeanFactory.getBean(AbstractBeanFactory.java:242)
at
org.springframework.beans.factory.support.AbstractBeanFactory.getBean(AbstractBeanFactory.java:156)
at
org.springframework.beans.factory.support.BeanDefinitionValueResolver.resolveReference(BeanDefinitionValueResolver.java:248)
at
org.springframework.beans.factory.support.BeanDefinitionValueResolver.resolveValueIfNecessary(BeanDefinitionValueResolver.java:128)
at
org.springframework.beans.factory.support.ConstructorResolver.resolveConstructorArguments(ConstructorResolver.java:329)
at
org.springframework.beans.factory.support.ConstructorResolver.autowireConstructor(ConstructorResolver.java:97)
at
org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.autowireConstructor(AbstractAutowireCapableBeanFactory.java:684)
at
org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.createBeanInstance(AbstractAutowireCapableBeanFactory.java:622)
at
org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.createBean(AbstractAutowireCapableBeanFactory.java:381)
at
org.springframework.beans.factory.support.AbstractBeanFactory$1.getObject(AbstractBeanFactory.java:245)
at
org.springframework.beans.factory.support.DefaultSingletonBeanRegistry.getSingleton(DefaultSingletonBeanRegistry.java:140)
at
org.springframework.beans.factory.support.AbstractBeanFactory.getBean(AbstractBeanFactory.java:242)
at
org.springframework.beans.factory.support.AbstractBeanFactory.getBean(AbstractBeanFactory.java:156)
at
org.springframework.beans.factory.support.DefaultListableBeanFactory.preInstantiateSingletons(DefaultListableBeanFactory.java:273)
at
org.springframework.context.support.AbstractApplicationContext.refresh(AbstractApplicationContext.java:346)
at
org.springframework.context.support.ClassPathXmlApplicationContext.<init>(ClassPathXmlApplicationContext.java:125)
at
org.springframework.context.support.ClassPathXmlApplicationContext.<init>(ClassPathXmlApplicationContext.java:106)
at ome.system.OmeroContext.<init>(OmeroContext.java:80)
at sun.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method)
at
sun.reflect.NativeConstructorAccessorImpl.newInstance(NativeConstructorAccessorImpl.java:39)
at
sun.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:27)
at java.lang.reflect.Constructor.newInstance(Constructor.java:513)
at
org.springframework.beans.BeanUtils.instantiateClass(BeanUtils.java:84)
at
org.springframework.beans.factory.support.SimpleInstantiationStrategy.instantiate(SimpleInstantiationStrategy.java:78)
at
org.springframework.beans.factory.support.ConstructorResolver.autowireConstructor(ConstructorResolver.java:156)
at
org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.autowireConstructor(AbstractAutowireCapableBeanFactory.java:684)
at
org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.createBeanInstance(AbstractAutowireCapableBeanFactory.java:622)
at
org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.createBean(AbstractAutowireCapableBeanFactory.java:381)
at
org.springframework.beans.factory.support.AbstractBeanFactory$1.getObject(AbstractBeanFactory.java:245)
at
org.springframework.beans.factory.support.DefaultSingletonBeanRegistry.getSingleton(DefaultSingletonBeanRegistry.java:140)
at
org.springframework.beans.factory.support.AbstractBeanFactory.getBean(AbstractBeanFactory.java:242)
at
org.springframework.beans.factory.support.AbstractBeanFactory.getBean(AbstractBeanFactory.java:156)
at
org.springframework.context.support.AbstractApplicationContext.getBean(AbstractApplicationContext.java:640)
at
org.springframework.beans.factory.access.SingletonBeanFactoryLocator.useBeanFactory(SingletonBeanFactoryLocator.java:393)
at ome.system.OmeroContext.getInstance(OmeroContext.java:192)
at
ome.system.OmeroContext.getManagedServerContext(OmeroContext.java:174)
at ome.services.jboss.OmeroContextHook.<init>(OmeroContextHook.java:40)
at sun.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method)
at
sun.reflect.NativeConstructorAccessorImpl.newInstance(NativeConstructorAccessorImpl.java:39)
at
sun.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:27)
at java.lang.reflect.Constructor.newInstance(Constructor.java:513)
at org.jboss.ejb3.EJBContainer.construct(EJBContainer.java:459)
at
org.jboss.ejb3.service.ServiceContainer.start(ServiceContainer.java:104)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at
sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:39)
at
sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25)
at java.lang.reflect.Method.invoke(Method.java:597)
at
org.jboss.ejb3.ServiceDelegateWrapper.startService(ServiceDelegateWrapper.java:99)
at
org.jboss.system.ServiceMBeanSupport.jbossInternalStart(ServiceMBeanSupport.java:289)
at
org.jboss.system.ServiceMBeanSupport.jbossInternalLifecycle(ServiceMBeanSupport.java:245)
at sun.reflect.GeneratedMethodAccessor3.invoke(Unknown Source)
at
sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25)
at java.lang.reflect.Method.invoke(Method.java:597)
at
org.jboss.mx.interceptor.ReflectedDispatcher.invoke(ReflectedDispatcher.java:155)
at org.jboss.mx.server.Invocation.dispatch(Invocation.java:94)
at org.jboss.mx.server.Invocation.invoke(Invocation.java:86)
at
org.jboss.mx.server.AbstractMBeanInvoker.invoke(AbstractMBeanInvoker.java:264)
at org.jboss.mx.server.MBeanServerImpl.invoke(MBeanServerImpl.java:659)
at
org.jboss.system.ServiceController$ServiceProxy.invoke(ServiceController.java:978)
at $Proxy0.start(Unknown Source)
at org.jboss.system.ServiceController.start(ServiceController.java:417)
at sun.reflect.GeneratedMethodAccessor6.invoke(Unknown Source)
at
sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25)
at java.lang.reflect.Method.invoke(Method.java:597)
at
org.jboss.mx.interceptor.ReflectedDispatcher.invoke(ReflectedDispatcher.java:155)
at org.jboss.mx.server.Invocation.dispatch(Invocation.java:94)
at org.jboss.mx.server.Invocation.invoke(Invocation.java:86)
at
org.jboss.mx.server.AbstractMBeanInvoker.invoke(AbstractMBeanInvoker.java:264)
at org.jboss.mx.server.MBeanServerImpl.invoke(MBeanServerImpl.java:659)
at org.jboss.mx.util.MBeanProxyExt.invoke(MBeanProxyExt.java:210)
at $Proxy49.start(Unknown Source)
at
org.jboss.ejb3.JmxKernelAbstraction.install(JmxKernelAbstraction.java:82)
at
org.jboss.ejb3.Ejb3Deployment.registerEJBContainer(Ejb3Deployment.java:439)
at org.jboss.ejb3.Ejb3Deployment.start(Ejb3Deployment.java:486)
at org.jboss.ejb3.Ejb3Module.startService(Ejb3Module.java:139)
at
org.jboss.system.ServiceMBeanSupport.jbossInternalStart(ServiceMBeanSupport.java:289)
at
org.jboss.system.ServiceMBeanSupport.jbossInternalLifecycle(ServiceMBeanSupport.java:245)
at sun.reflect.GeneratedMethodAccessor3.invoke(Unknown Source)
at
sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25)
at java.lang.reflect.Method.invoke(Method.java:597)
at
org.jboss.mx.interceptor.ReflectedDispatcher.invoke(ReflectedDispatcher.java:155)
at org.jboss.mx.server.Invocation.dispatch(Invocation.java:94)
at org.jboss.mx.server.Invocation.invoke(Invocation.java:86)
at
org.jboss.mx.server.AbstractMBeanInvoker.invoke(AbstractMBeanInvoker.java:264)
at org.jboss.mx.server.MBeanServerImpl.invoke(MBeanServerImpl.java:659)
at
org.jboss.system.ServiceController$ServiceProxy.invoke(ServiceController.java:978)
at $Proxy0.start(Unknown Source)
at org.jboss.system.ServiceController.start(ServiceController.java:417)
at sun.reflect.GeneratedMethodAccessor6.invoke(Unknown Source)
at
sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25)
at java.lang.reflect.Method.invoke(Method.java:597)
at
org.jboss.mx.interceptor.ReflectedDispatcher.invoke(ReflectedDispatcher.java:155)
at org.jboss.mx.server.Invocation.dispatch(Invocation.java:94)
at org.jboss.mx.server.Invocation.invoke(Invocation.java:86)
at
org.jboss.mx.server.AbstractMBeanInvoker.invoke(AbstractMBeanInvoker.java:264)
at org.jboss.mx.server.MBeanServerImpl.invoke(MBeanServerImpl.java:659)
at org.jboss.mx.util.MBeanProxyExt.invoke(MBeanProxyExt.java:210)
at $Proxy34.start(Unknown Source)
at org.jboss.ejb3.EJB3Deployer.start(EJB3Deployer.java:449)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at
sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:39)
at
sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25)
at java.lang.reflect.Method.invoke(Method.java:597)
at
org.jboss.mx.interceptor.ReflectedDispatcher.invoke(ReflectedDispatcher.java:155)
at org.jboss.mx.server.Invocation.dispatch(Invocation.java:94)
at
org.jboss.mx.interceptor.AbstractInterceptor.invoke(AbstractInterceptor.java:133)
at org.jboss.mx.server.Invocation.invoke(Invocation.java:88)
at
org.jboss.mx.interceptor.ModelMBeanOperationInterceptor.invoke(ModelMBeanOperationInterceptor.java:142)
at
org.jboss.mx.interceptor.DynamicInterceptor.invoke(DynamicInterceptor.java:97)
at
org.jboss.system.InterceptorServiceMBeanSupport.invokeNext(InterceptorServiceMBeanSupport.java:238)
at
org.jboss.ws.server.WebServiceDeployer.start(WebServiceDeployer.java:117)
at
org.jboss.deployment.SubDeployerInterceptorSupport$XMBeanInterceptor.start(SubDeployerInterceptorSupport.java:188)
at
org.jboss.deployment.SubDeployerInterceptor.invoke(SubDeployerInterceptor.java:95)
at org.jboss.mx.server.Invocation.invoke(Invocation.java:88)
at
org.jboss.mx.server.AbstractMBeanInvoker.invoke(AbstractMBeanInvoker.java:264)
at org.jboss.mx.server.MBeanServerImpl.invoke(MBeanServerImpl.java:659)
at org.jboss.mx.util.MBeanProxyExt.invoke(MBeanProxyExt.java:210)
at $Proxy35.start(Unknown Source)
at org.jboss.deployment.MainDeployer.start(MainDeployer.java:1007)
at org.jboss.deployment.MainDeployer.start(MainDeployer.java:997)
at org.jboss.deployment.MainDeployer.deploy(MainDeployer.java:808)
at org.jboss.deployment.MainDeployer.deploy(MainDeployer.java:771)
at sun.reflect.GeneratedMethodAccessor14.invoke(Unknown Source)
at
sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25)
at java.lang.reflect.Method.invoke(Method.java:597)
at
org.jboss.mx.interceptor.ReflectedDispatcher.invoke(ReflectedDispatcher.java:155)
at org.jboss.mx.server.Invocation.dispatch(Invocation.java:94)
at
org.jboss.mx.interceptor.AbstractInterceptor.invoke(AbstractInterceptor.java:133)
at org.jboss.mx.server.Invocation.invoke(Invocation.java:88)
at
org.jboss.mx.interceptor.ModelMBeanOperationInterceptor.invoke(ModelMBeanOperationInterceptor.java:142)
at org.jboss.mx.server.Invocation.invoke(Invocation.java:88)
at
org.jboss.mx.server.AbstractMBeanInvoker.invoke(AbstractMBeanInvoker.java:264)
at org.jboss.mx.server.MBeanServerImpl.invoke(MBeanServerImpl.java:659)
at org.jboss.mx.util.MBeanProxyExt.invoke(MBeanProxyExt.java:210)
at $Proxy6.deploy(Unknown Source)
at
org.jboss.deployment.scanner.URLDeploymentScanner.deploy(URLDeploymentScanner.java:421)
at
org.jboss.deployment.scanner.URLDeploymentScanner.scan(URLDeploymentScanner.java:634)
at
org.jboss.deployment.scanner.AbstractDeploymentScanner$ScannerThread.doScan(AbstractDeploymentScanner.java:263)
at
org.jboss.deployment.scanner.AbstractDeploymentScanner.startService(AbstractDeploymentScanner.java:336)
at
org.jboss.system.ServiceMBeanSupport.jbossInternalStart(ServiceMBeanSupport.java:289)
at
org.jboss.system.ServiceMBeanSupport.jbossInternalLifecycle(ServiceMBeanSupport.java:245)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at
sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:39)
at
sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25)
at java.lang.reflect.Method.invoke(Method.java:597)
at
org.jboss.mx.interceptor.ReflectedDispatcher.invoke(ReflectedDispatcher.java:155)
at org.jboss.mx.server.Invocation.dispatch(Invocation.java:94)
at org.jboss.mx.server.Invocation.invoke(Invocation.java:86)
at
org.jboss.mx.server.AbstractMBeanInvoker.invoke(AbstractMBeanInvoker.java:264)
at org.jboss.mx.server.MBeanServerImpl.invoke(MBeanServerImpl.java:659)
at
org.jboss.system.ServiceController$ServiceProxy.invoke(ServiceController.java:978)
at $Proxy0.start(Unknown Source)
at org.jboss.system.ServiceController.start(ServiceController.java:417)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at
sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:39)
at
sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25)
at java.lang.reflect.Method.invoke(Method.java:597)
at
org.jboss.mx.interceptor.ReflectedDispatcher.invoke(ReflectedDispatcher.java:155)
at org.jboss.mx.server.Invocation.dispatch(Invocation.java:94)
at org.jboss.mx.server.Invocation.invoke(Invocation.java:86)
at
org.jboss.mx.server.AbstractMBeanInvoker.invoke(AbstractMBeanInvoker.java:264)
at org.jboss.mx.server.MBeanServerImpl.invoke(MBeanServerImpl.java:659)
at org.jboss.mx.util.MBeanProxyExt.invoke(MBeanProxyExt.java:210)
at $Proxy4.start(Unknown Source)
at org.jboss.deployment.SARDeployer.start(SARDeployer.java:302)
at org.jboss.deployment.MainDeployer.start(MainDeployer.java:1007)
at org.jboss.deployment.MainDeployer.deploy(MainDeployer.java:808)
at org.jboss.deployment.MainDeployer.deploy(MainDeployer.java:771)
at org.jboss.deployment.MainDeployer.deploy(MainDeployer.java:755)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at
sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:39)
at
sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25)
at java.lang.reflect.Method.invoke(Method.java:597)
at
org.jboss.mx.interceptor.ReflectedDispatcher.invoke(ReflectedDispatcher.java:155)
at org.jboss.mx.server.Invocation.dispatch(Invocation.java:94)
at
org.jboss.mx.interceptor.AbstractInterceptor.invoke(AbstractInterceptor.java:133)
at org.jboss.mx.server.Invocation.invoke(Invocation.java:88)
at
org.jboss.mx.interceptor.ModelMBeanOperationInterceptor.invoke(ModelMBeanOperationInterceptor.java:142)
at org.jboss.mx.server.Invocation.invoke(Invocation.java:88)
at
org.jboss.mx.server.AbstractMBeanInvoker.invoke(AbstractMBeanInvoker.java:264)
at org.jboss.mx.server.MBeanServerImpl.invoke(MBeanServerImpl.java:659)
at org.jboss.mx.util.MBeanProxyExt.invoke(MBeanProxyExt.java:210)
at $Proxy5.deploy(Unknown Source)
at org.jboss.system.server.ServerImpl.doStart(ServerImpl.java:482)
at org.jboss.system.server.ServerImpl.start(ServerImpl.java:362)
at org.jboss.Main.boot(Main.java:200)
at org.jboss.Main$1.run(Main.java:464)
at java.lang.Thread.run(Thread.java:619)
Caused by: org.jboss.resource.JBossResourceException: Could not create
connection; - nested throwable:
(org.jboss.resource.JBossResourceException: Apparently wrong driver
class specified for URL: class: org.postgresql.Driver, url:
jdbc:postgresql://localhost/omero3)
at
org.jboss.resource.adapter.jdbc.local.LocalManagedConnectionFactory.createManagedConnection(LocalManagedConnectionFactory.java:177)
at
org.jboss.resource.connectionmanager.InternalManagedConnectionPool.createConnectionEventListener(InternalManagedConnectionPool.java:539)
at
org.jboss.resource.connectionmanager.InternalManagedConnectionPool.getConnection(InternalManagedConnectionPool.java:228)
at
org.jboss.resource.connectionmanager.JBossManagedConnectionPool$BasePool.getConnection(JBossManagedConnectionPool.java:417)
at
org.jboss.resource.connectionmanager.BaseConnectionManager2.getManagedConnection(BaseConnectionManager2.java:324)
at
org.jboss.resource.connectionmanager.TxConnectionManager.getManagedConnection(TxConnectionManager.java:301)
at
org.jboss.resource.connectionmanager.BaseConnectionManager2.allocateConnection(BaseConnectionManager2.java:379)
at
org.jboss.resource.connectionmanager.BaseConnectionManager2$ConnectionManagerProxy.allocateConnection(BaseConnectionManager2.java:812)
at
org.jboss.resource.adapter.jdbc.WrapperDataSource.getConnection(WrapperDataSource.java:88)
... 209 more
Caused by: org.jboss.resource.JBossResourceException: Apparently wrong
driver class specified for URL: class: org.postgresql.Driver, url:
jdbc:postgresql://localhost/omero3
at
org.jboss.resource.adapter.jdbc.local.LocalManagedConnectionFactory.getDriver(LocalManagedConnectionFactory.java:274)
at
org.jboss.resource.adapter.jdbc.local.LocalManagedConnectionFactory.createManagedConnection(LocalManagedConnectionFactory.java:168)
... 217 more
10:28:03,863 INFO [Dialect] Using dialect:
org.hibernate.dialect.PostgreSQLDialect
10:28:03,883 INFO [TransactionFactoryFactory] Using default transaction
strategy (direct JDBC transactions)
10:28:03,890 INFO [TransactionManagerLookupFactory] No
TransactionManagerLookup configured (in JTA environment, use of
read-write or transactional second-level cache is not recommended)
10:28:03,890 INFO [SettingsFactory] Automatic flush during
beforeCompletion(): disabled
10:28:03,890 INFO [SettingsFactory] Automatic session close at end of
transaction: disabled
10:28:03,893 INFO [SettingsFactory] Scrollable result sets: disabled
10:28:03,893 INFO [SettingsFactory] JDBC3 getGeneratedKeys(): disabled
10:28:03,894 INFO [SettingsFactory] Connection release mode: on_close
10:28:03,894 INFO [SettingsFactory] Default batch fetch size: 1
10:28:03,894 INFO [SettingsFactory] Generate SQL with comments: disabled
10:28:03,894 INFO [SettingsFactory] Order SQL updates by primary key:
disabled
10:28:03,894 INFO [SettingsFactory] Query translator:
org.hibernate.hql.ast.ASTQueryTranslatorFactory
10:28:03,903 INFO [ASTQueryTranslatorFactory] Using
ASTQueryTranslatorFactory
10:28:03,903 INFO [SettingsFactory] Query language substitutions: {}
10:28:03,903 INFO [SettingsFactory] JPA-QL strict compliance: disabled
10:28:03,903 INFO [SettingsFactory] Second-level cache: enabled
10:28:03,904 INFO [SettingsFactory] Query cache: disabled
10:28:03,904 INFO [SettingsFactory] Cache provider:
org.hibernate.cache.NoCacheProvider
10:28:03,904 INFO [SettingsFactory] Optimize cache for minimal puts:
disabled
10:28:03,904 INFO [SettingsFactory] Structured second-level cache
entries: disabled
10:28:03,924 INFO [SettingsFactory] Statistics: disabled
10:28:03,924 INFO [SettingsFactory] Deleted entity synthetic identifier
rollback: disabled
10:28:03,924 INFO [SettingsFactory] Default entity-mode: pojo
10:28:03,924 INFO [SettingsFactory] Named query checking : enabled
10:28:04,010 INFO [SessionFactoryImpl] building session factory
10:28:17,965 INFO [SessionFactoryObjectFactory] Not binding factory to
JNDI, no JNDI name configured
10:28:18,747 INFO [JtaTransactionManager] Using JTA UserTransaction:
org.jboss.tm.usertx.client.ServerVMClientUserTransaction at 19546ee
10:28:18,747 INFO [JtaTransactionManager] Using JTA TransactionManager:
org.jboss.tm.TxManager at 163de20
10:28:20,236 INFO [SimpleThreadPool] Job execution threads will use
class loader of thread: main
10:28:20,315 INFO [QuartzScheduler] Quartz Scheduler v.1.5.2 created.
10:28:20,320 INFO [RAMJobStore] RAMJobStore initialized.
10:28:20,321 INFO [StdSchedulerFactory] Quartz scheduler
'DefaultQuartzScheduler' initialized from default resource file in
Quartz package: 'quartz.properties'
10:28:20,321 INFO [StdSchedulerFactory] Quartz scheduler version: 1.5.2
10:28:20,323 INFO [QuartzScheduler] JobFactory set to:
org.springframework.scheduling.quartz.AdaptableJobFactory at a01711
10:28:20,329 INFO [SchedulerFactoryBean] Starting Quartz Scheduler now
10:28:20,330 INFO [QuartzScheduler] Scheduler
DefaultQuartzScheduler_$_NON_CLUSTERED started.
10:28:21,056 INFO [STDOUT]
-------------------------------------------------
10:28:21,057 INFO [STDOUT] OMERO Version: 3.0-Beta2 (Rev: 1586) Ready.
10:28:21,057 INFO [STDOUT]
-------------------------------------------------
10:28:21,060 INFO [EJB3Deployer] Deployed:
file:/home/cihan/omero-3.0-Beta2/jboss-4.0.4.GA/server/default/tmp/deploy/tmp57720omero.ear-contents/server-3.0-Beta2.jar
10:28:21,064 INFO [EARDeployer] Started J2EE application:
file:/home/cihan/omero-3.0-Beta2/jboss-4.0.4.GA/server/default/deploy/omero.ear
10:28:21,127 INFO [Http11BaseProtocol] Starting Coyote HTTP/1.1 on
http-0.0.0.0-8080
10:28:21,739 INFO [ChannelSocket] JK: ajp13 listening on /0.0.0.0:8009
10:28:21,888 INFO [JkMain] Jk running ID=0 time=0/583 config=null
10:28:21,927 INFO [Server] JBoss (MX MicroKernel) [4.0.4.GA (build:
CVSTag=JBoss_4_0_4_GA date=200605151000)] Started in 2m:24s:283ms
10:29:03,655 INFO [ServiceHandler] 5602325::70 Meth: getUserDetails
10:29:03,659 INFO [ServiceHandler] 5602325::70 Args: [[cihan],
{counts=true, fields=[Ljava.lang.String;@4134e0}]
10:29:04,121 INFO [EventHandler] 5602325::70 Auth:
user=1,group=2,event=null(User)
10:29:04,178 WARN [QueryTranslatorImpl] firstResult/maxResults
specified with collection fetch; applying in memory!
10:29:04,330 INFO [ServiceHandler] 5602325::70 Rslt:
{cihan=Experimenter:Id_1}
10:29:04,730 INFO [ServiceHandler] 5602325::70 Meth:
loadContainerHierarchy
10:29:04,731 INFO [ServiceHandler] 5602325::70 Args: [class
ome.model.containers.Project, null, {experimenter=1, counts=1,
fields=[Ljava.lang.String;@bfbd32}]
10:29:04,785 INFO [EventHandler] 5602325::70 Auth:
user=1,group=2,event=null(User)
10:29:04,968 WARN [PojosImpl] Skipping Image_annotations in collection
counts.
10:29:04,968 WARN [PojosImpl] Skipping Image_categoryLinks in
collection counts.
10:29:04,988 INFO [ServiceHandler] 5602325::70 Rslt: [Project:Id_1]
10:29:05,068 INFO [ServiceHandler] 5602325::70 Meth:
loadContainerHierarchy
10:29:05,069 INFO [ServiceHandler] 5602325::70 Args: [class
ome.model.containers.Dataset, null, {experimenter=1, counts=true,
fields=[Ljava.lang.String;@1b93cf8}]
10:29:05,114 INFO [EventHandler] 5602325::70 Auth:
user=1,group=2,event=null(User)
10:29:05,135 WARN [PojosImpl] Skipping Image_annotations in collection
counts.
10:29:05,135 WARN [PojosImpl] Skipping Image_categoryLinks in
collection counts.
10:29:05,150 INFO [ServiceHandler] 5602325::70 Rslt: [Dataset:Id_1,
Dataset:Id_2]
10:29:05,223 INFO [ServiceHandler] 5602325::70 Meth: getCollectionCount
10:29:05,224 INFO [ServiceHandler] 5602325::70 Args:
[ome.model.containers.Dataset, Dataset_imageLinks, [1],
{fields=[Ljava.lang.String;@197886c}]
10:29:05,273 INFO [EventHandler] 5602325::70 Auth:
user=1,group=2,event=null(User)
10:29:05,343 INFO [ServiceHandler] 5602325::70 Rslt: {1=6}
10:29:05,363 INFO [ServiceHandler] 5602325::70 Meth: getCollectionCount
10:29:05,365 INFO [ServiceHandler] 5602325::70 Args:
[ome.model.containers.Dataset, Dataset_imageLinks, [2],
{fields=[Ljava.lang.String;@aa23e5}]
10:29:05,442 INFO [EventHandler] 5602325::70 Auth:
user=1,group=2,event=null(User)
10:29:05,463 INFO [ServiceHandler] 5602325::70 Rslt: {2=3}
10:29:07,911 INFO [ServiceHandler] 5602325::70 Meth:
loadContainerHierarchy
10:29:07,912 INFO [ServiceHandler] 5602325::70 Args: [class
ome.model.containers.Dataset, [1], {experimenter=1, counts=1,
leaves=true, fields=[Ljava.lang.String;@17a6bd}]
10:29:07,953 INFO [EventHandler] 5602325::70 Auth:
user=1,group=2,event=null(User)
10:29:08,303 INFO [ServiceHandler] 5602325::70 Rslt: [Dataset:Id_1]
10:29:17,305 INFO [ServiceHandler] 5602325::70 Meth: setPixelsId
10:29:17,305 INFO [ServiceHandler] 5602325::70 Args: [1]
10:29:17,446 INFO [EventHandler] 5602325::70 Auth:
user=1,group=2,event=86(User)
10:29:17,581 WARN [QueryTranslatorImpl] firstResult/maxResults
specified with collection fetch; applying in memory!
10:29:17,673 WARN [QueryTranslatorImpl] firstResult/maxResults
specified with collection fetch; applying in memory!
10:29:18,800 INFO [Renderer] Enabling alphaless rendering.
10:29:18,801 INFO [Renderer] Enabling primary color rendering.
10:29:18,813 INFO [ServiceHandler] 5602325::70 Rslt: true
10:29:18,836 INFO [ServiceHandler] 5602325::70 Meth: getThumbnailDirect
10:29:18,837 INFO [ServiceHandler] 5602325::70 Args: [96, 73]
10:29:18,870 INFO [EventHandler] 5602325::70 Auth:
user=1,group=2,event=86(User)
10:29:18,877 INFO [Renderer] Using:
'omeis.providers.re.GreyScaleStrategy' rendering strategy.
10:29:18,879 INFO [RomioPixelBuffer] Retrieving plane: 0x0x0
10:29:18,885 INFO [Renderer] Created Plane2D with dimensions 1344x1024x2
10:29:19,084 INFO [Renderer]
--------------- RENDERING STATS ---------------
CONTEXT-------OMEIS Pixels ID: 1Plane: Type: XY, z=0, timepoint: 0Plane
Data: 1344x1024 PixelsType:Id_5Channels: 1Rendered Image: 4128768
bytesColor Model: greyscaleCodomain maps: IdentityMap.
TIMES (ms)----------Memory Allocation: 20I/O: 7 -> c=0:7 Rendering:
0Total: 205
-----------------------------------------------
10:29:19,108 INFO [ThumbnailBean] Setting xScale factor: 96/1344
10:29:19,108 INFO [ThumbnailBean] Setting yScale factor: 96/1344
10:29:19,108 INFO [ThumbnailBean] Scaling to: 73x96
X connection to localhost:10.0 broken (explicit kill or server shutdown).
Thanks,
Cihan.
Jason Swedlow wrote:
> Hi Cihan-
>
> Thanks for your email. We'd love to help you get up and running.
>
> Can you provide our team with some more info-- server logs, output
> etc. What type of images did you import? Any more details about
> login etc?
>
> BTW, see the Starting Points at
> http://trac.openmicroscopy.org.uk/omero. These may help solve the
> problem.
>
> Cheers,
>
> jason
>
> On 8 Aug 2007, at 06:33, cihan cetin wrote:
>
>> Hi,
>>
>> I start working with omero, I created a project and upload some
>> pictures.
>> Then I try to visualise the picture, the server crash.
>> I am runing the server on a pentium 4 1.7 gh,1 gb of ram, cent os 5,
>> postgres 8.1.8, java 1.6.
>>
>> What can be the problem?
>>
>> Cheers,
>> Cihan
>>
>> ---------------------------------------------------------------
>> Mr. Cihan Cetin
>>
>> Software Engineer (ENSISA Mulhouse, France)
>> Pepperkok Group,
>> European Molecular Biology Laboratory
>> Meyerhofstr. 1
>> 69117 Heidelberg
>> GERMANY
>>
>> Tel +49 6221 387 404
>>
>> _______________________________________________
>> ome-devel mailing list
>> ome-devel at lists.openmicroscopy.org.uk
>> http://lists.openmicroscopy.org.uk/mailman/listinfo/ome-devel
>
>
> **************************
> MSI/WTB Complex
> The University of Dundee
> Dow Street
> Dundee DD1 5EH
> United Kingdom
>
> phone (01382) 385819
> Intl phone: 44 1382 385819
> FAX (01382) 388072
> email: jason at lifesci.dundee.ac.uk
>
> Lab Page: http://www.dundee.ac.uk/lifesciences/swedlow/
> Open Microscopy Environment: http://openmicroscopy.org
> **************************
>
>
--
-------------------------------------------------------------
Mr. Cihan Cetin
Software Engineer (ENSISA Mulhouse, France)
Pepperkok Group,
European Molecular Biology Laboratory
Meyerhofstr. 1
69117 Heidelberg
GERMANY
Tel +49 6221 387 404
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