[ome-devel] error while installing OME on mandrake 10.1

[Gaetan Lehmann]

On Thu, 18 Nov 2004 09:32:01 -0500, Ilya Goldberg <igg at nih.gov> wrote:

> Unfortunately, this is a known bug in Perl LWP:
> http://bugs.openmicroscopy.org.uk/show_bug.cgi?id=256
>
> Can you do a module check:
> sudo perl install.pl -c

perl install.pl -c
Unable to restore the installation environemnt from file at install.pl  
line 203.


I'm using LWP v5.800.
v5.801 solve the problem.

Thank you :-)


> And email back what version of LWP you're using.
> We've specifically excluded 5.80, but if this bug persists in later  
> versions, we may have to exclude them as well.
> If you're installing a released version of OME, rather than from CVS,  
> then that LWP version check and exclusion isn't in there.
>
> In any case, the solution to this bug is to install a pre-5.80 version  
> of the Perl LWP package.
> -Ilya
>
>
> On Nov 18, 2004, at 5:42 AM, Gaetan Lehmann wrote:
>
>>
>>
>> you're right : my home dir haven't got good permission :-)
>>
>> but Installation still failed at "Import core XML" :-(
>> CoreDatabaseTablesTask.log ends with :
>>
>>
>> ERROR LOADING XML FILE "/tmp/OME/src/xml/OMECoreTypes.ome" -- OUTPUT:  
>> "500 Not a SCALAR reference
>>  at /tmp/OME/src/perl2/OME/Image/Server.pm line 468
>>         OME::Image::Server::__callOMEIS('OME::Image::Server', 'Method',  
>> 'UploadFile', 'File', '/tmp/OME/src/xml/OMECoreTypes.ome') called at  
>> /tmp/OME/src/p
>> erl2/OME/Image/Server.pm line 1050
>>         OME::Image::Server::uploadFile('OME::Image::Server',  
>> '/tmp/OME/src/xml/OMECoreTypes.ome') called at  
>> /tmp/OME/src/perl2/OME/Image/Server/File.pm lin
>> e 112
>>         OME::Image::Server::File::upload('OME::Image::Server::File',  
>> '/tmp/OME/src/xml/OMECoreTypes.ome') called at  
>> /tmp/OME/src/perl2/OME/Tasks/OMEImport.
>> pm line 138
>>         OME::Tasks::OMEImport::importFile('OME::Tasks:: 
>> OMEImport=HASH(0x952eb00)', '/tmp/OME/src/xml/OMECoreTypes.ome',  
>> 'NoDuplicates', 1, 'IgnoreAlterTabl
>> eErrors', 1) called at  
>> /tmp/OME/src/perl2/OME/Install/CoreDatabaseTablesTask.pm line 814
>>         eval {...} called at  
>> /tmp/OME/src/perl2/OME/Install/CoreDatabaseTablesTask.pm line 813
>>         OME::Install::CoreDatabaseTablesTask::load_xml_core('OME:: 
>> Session=HASH(0x9530b70)', 'GLOB(0x8360874)') called at  
>> /tmp/OME/src/perl2/OME/Install/Cor
>> eDatabaseTablesTask.pm line 1067
>>         OME::Install::CoreDatabaseTablesTask::execute() called at (eval  
>> 171) line 1
>>         eval 'OME::Install::CoreDatabaseTablesTask::execute()
>> ;' called at ./install.pl line 79
>>         main::run_tasks() called at ./install.pl line 249
>> "
>>
>>
>> ... Not really clear for me !!
>>
>>
>>
>>
>> On Wed, 17 Nov 2004 15:19:59 +0000, Chris Allan <callan at blackcat.ca>  
>> wrote:
>>
>>> On Wed, Nov 17, 2004 at 03:02:53PM +0100, Gaetan Lehmann wrote:
>>>>
>>>> Hi,
>>>>
>>>> I'm trying to install OME 2.2.1.1 on mandrake 10.1 .
>>>>
>>>> Installation failed with the following error :
>>>>
>>>> Checking OMEIS repository [SUCCESS].
>>>> Importing core XML
>>>>   \__ /home/glehmann/tmp/OME/src/xml/OMECoreTypes.ome [FAILURE].
>>>>
>>>>
>>>> Errors executing task: Error loading XML file
>>>> "/home/glehmann/tmp/OME/src/xml/OMECoreTypes.ome", see
>>>> CoreDatabaseTablesTask.log details. at (eval 171) line 1
>>>>
>>>>  at ./install.pl line 80
>>>>         main::run_tasks() called at ./install.pl line 249
>>>> # Looks like your test died before it could output anything.
>>>>
>>>> CoreDatabaseTablesTask.log ends with :
>>>>
>>>> ERROR LOADING XML FILE  
>>>> "/home/glehmann/tmp/OME/src/xml/OMECoreTypes.ome"
>>>> -- OUTPUT: "Cannot find file
>>>> /home/glehmann/tmp/OME/src/xml/OMECoreTypes.ome at
>>>> /home/glehmann/tmp/OME/src/perl2/OME/Image/Server.pm line 443."
>>>>
>>>> but OMECoreTypes.ome exists and is readable by everybody
>>>>
>>>> ll /home/glehmann/tmp/OME/src/xml/OMECoreTypes.ome
>>>> -rw-r--r--  1 1002 users 31239 nov 17 13:19
>>>> /home/glehmann/tmp/OME/src/xml/OMECoreTypes.ome
>>>
>>> ls -al /home/glehmann
>>>
>>> Does your home directory have execute permissions for users other than
>>> yourself?
>>>
>>>>
>>>>
>>>>
>>>> Can someone help me ?
>>>>
>>>>
>>>>
>>>>
>>>> Installation notes :
>>>>
>>>> + Mandrake 10.1 is packaged with mod_perl 2, so I patched source with  
>>>> the
>>>> (really dirty) following commands :
>>>>
>>>> find -type f -exec perl -pi -e  
>>>> "s/Apache::Registry/ModPerl::Registry/g" {}
>>>> \;
>>>> find -type f -exec perl -pi -e  
>>>> "s/PerlFreshRestart/#PerlFreshRestart/g" {}
>>>> \;
>>>> find -type f -exec perl -pi -e "s/CGI-Perl/CGI/g" {} \;
>>>>
>>>> This seems to work, but perhaps it is the problem.
>>>>
>>>> + apache 2.0.50
>>>> + perl v5.8.5
>>>> + setting Include in httpd2.conf failed. I set it manually.
>>>>
>>>>
>>>> --
>>>> Gaetan Lehmann <gaetan.lehmann at jouy.inra.fr>
>>>> Tel: +33 1 34 65 22 34
>>>> Biologie du D?veloppement et de la Reproduction
>>>> INRA de Jouy-en-Josas
>>>>
>>>> _______________________________________________
>>>> ome-devel mailing list
>>>> ome-devel at lists.openmicroscopy.org.uk
>>>> http://lists.openmicroscopy.org.uk/mailman/listinfo/ome-devel
>>>>
>>>
>>
>>
>>
>> --Gaetan Lehmann <gaetan.lehmann at jouy.inra.fr>
>> Tel: +33 1 34 65 22 34
>> Biologie du Développement et de la Reproduction
>> INRA de Jouy-en-Josas (France)
>> _______________________________________________
>> ome-devel mailing list
>> ome-devel at lists.openmicroscopy.org.uk
>> http://lists.openmicroscopy.org.uk/mailman/listinfo/ome-devel
>>
>
> _______________________________________________
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> ome-devel at lists.openmicroscopy.org.uk
> http://lists.openmicroscopy.org.uk/mailman/listinfo/ome-devel
>



-- 
Gaetan Lehmann <gaetan.lehmann at jouy.inra.fr>
Tel: +33 1 34 65 22 34
Biologie du Développement et de la Reproduction
INRA de Jouy-en-Josas (France)