[ome-devel] Import again and again...

[Stefan Frank]

Further adventures with the RPC-Import: I tried the TestImporter from 
OME-JAVA which brought me this happy stack of Perl-Exceptions (as it has 
the same code, Visbio suffers the same excpetion) The error comes from 
the ds, importing the image works fine - has anybody seen this error?! I 
  suspect that it's a version-problem, the ome-installation is quite old 
(around may this year) - anybody seen this before?


class org.apache.xmlrpc.XmlRpcException
org.openmicroscopy.ds.RemoteServerErrorException: Column semantic_type 
does not exist at /usr/local/share/perl/5.8.3/OME/DBObject.pm line 2139
	OME::DBObject::__makeInsertSQLs('OME::SemanticType::__OriginalFile','DBI::db=HASH(0x957b5f8)','HASH(0x95b2600)') 
called at /usr/local/share/perl/5.8.3/OME/DBObject.pm line 2317
	OME::DBObject::__createNewInstance('OME::SemanticType::__OriginalFile','DBI::db=HASH(0x957b5f8)','HASH(0x95b2600)') 
called at /usr/local/share/perl/5.8.3/OME/Factory.pm line 820
	eval {...} called at /usr/local/share/perl/5.8.3/OME/Factory.pm line 819
	OME::Factory::newObject('OME::Factory=HASH(0x8d97374)','OME::SemanticType::__OriginalFile','HASH(0x95b2600)') 
called at /usr/local/share/perl/5.8.3/OME/Factory.pm line 985
	OME::Factory::newAttribute('OME::Factory=HASH(0x8d97374)','OME::SemanticType=HASH(0x95d3480)','undef','undef','HASH(0x95b2600)') 
called at /usr/local/share/perl/5.8.3/OME/Remote/DTO/GenericAssembler.pm 
line 277
	OME::Remote::DTO::GenericAssembler::__updateDTO('OME::Remote::DTO::GenericAssembler','OME::SemanticType::__OriginalFile','HASH(0x95b2600)','HASH(0x95a5d70)') 
called at /usr/local/share/perl/5.8.3/OME/Remote/DTO/GenericAssembler.pm 
line 329
	OME::Remote::DTO::GenericAssembler::updateDTOList('OME::Remote::DTO::GenericAssembler','ARRAY(0x95cc134)') 
called at 
/usr/local/share/perl/5.8.3/OME/Remote/Facades/GenericFacade.pm line 140
	OME::Remote::Facades::GenericFacade::updateObjects('OME::Remote::Facades::GenericFacade','ARRAY(0x95cc134)') 
called at /usr/local/share/perl/5.8.3/OME/Remote/Facade.pm line 194
	eval {...} called at /usr/local/share/perl/5.8.3/OME/Remote/Facade.pm 
line 189
	OME::Remote::Facade::dispatch('OME::Remote::Facade','caafa011bda7502ed7885c7ee0d2c9f0','updateObjects','ARRAY(0x95cc134)') 
called at /usr/share/perl5/SOAP/Lite.pm line 2179
	eval {...} called at /usr/share/perl5/SOAP/Lite.pm line 2170
	eval {...} called at /usr/share/perl5/SOAP/Lite.pm line 2142
	SOAP::Server::handle('OME::Remote::Apache=HASH(0x9494a6c)','<?xml 
version="1.0" encoding="ISO-8859-1"?><methodCall><metho...') called at 
/usr/share/perl5/SOAP/Transport/HTTP.pm line 258
	SOAP::Transport::HTTP::Server::handle('OME::Remote::Apache=HASH(0x9494a6c)') 
called at /usr/local/share/perl/5.8.3/OME/Remote/Apache/Transport.pm line 43
	OME::Remote::Apache::Transport::handler('OME::Remote::Apache=HASH(0x9494a6c)','Apache=SCALAR(0x8194018)') 
called at /usr/local/share/perl/5.8.3/OME/Remote/Apache.pm line 14
	OME::Remote::Apache::handler('Apache=SCALAR(0x8194018)') called at 
/dev/null line 0
	eval {...} called at /dev/null line 0
	OME::Factory::newObject('OME::Factory=HASH(0x8d97374)','OME::SemanticType::__OriginalFile','HASH(0x95b2600)') 
called at /usr/local/share/perl/5.8.3/OME/Factory.pm line 985
	OME::Factory::newAttribute('OME::Factory=HASH(0x8d97374)','OME::SemanticType=HASH(0x95d3480)','undef','undef','HASH(0x95b2600)') 
called at /usr/local/share/perl/5.8.3/OME/Remote/DTO/GenericAssembler.pm 
line 277
	OME::Remote::DTO::GenericAssembler::__updateDTO('OME::Remote::DTO::GenericAssembler','OME::SemanticType::__OriginalFile','HASH(0x95b2600)','HASH(0x95a5d70)') 
called at /usr/local/share/perl/5.8.3/OME/Remote/DTO/GenericAssembler.pm 
line 329
	OME::Remote::DTO::GenericAssembler::updateDTOList('OME::Remote::DTO::GenericAssembler','ARRAY(0x95cc134)') 
called at 
/usr/local/share/perl/5.8.3/OME/Remote/Facades/GenericFacade.pm line 140
	OME::Remote::Facades::GenericFacade::updateObjects('OME::Remote::Facades::GenericFacade','ARRAY(0x95cc134)') 
called at /usr/local/share/perl/5.8.3/OME/Remote/Facade.pm line 194
	eval {...} called at /usr/local/share/perl/5.8.3/OME/Remote/Facade.pm 
line 189
	OME::Remote::Facade::dispatch('OME::Remote::Facade','caafa011bda7502ed7885c7ee0d2c9f0','updateObjects','ARRAY(0x95cc134)') 
called at /usr/share/perl5/SOAP/Lite.pm line 2179
	eval {...} called at /usr/share/perl5/SOAP/Lite.pm line 2170
	eval {...} called at /usr/share/perl5/SOAP/Lite.pm line 2142
	SOAP::Server::handle('OME::Remote::Apache=HASH(0x9494a6c)','<?xml 
version="1.0" encoding="ISO-8859-1"?><methodCall><metho...') called at 
/usr/share/perl5/SOAP/Transport/HTTP.pm line 258
	SOAP::Transport::HTTP::Server::handle('OME::Remote::Apache=HASH(0x9494a6c)') 
called at /usr/local/share/perl/5.8.3/OME/Remote/Apache/Transport.pm line 43
	OME::Remote::Apache::Transport::handler('OME::Remote::Apache=HASH(0x9494a6c)','Apache=SCALAR(0x8194018)') 
called at /usr/local/share/perl/5.8.3/OME/Remote/Apache.pm line 14
	OME::Remote::Apache::handler('Apache=SCALAR(0x8194018)') called at 
/dev/null line 0
	eval {...} called at /dev/null line 0
	at org.openmicroscopy.ds.XmlRpcCaller.invoke(XmlRpcCaller.java:299)
	at org.openmicroscopy.ds.XmlRpcCaller.dispatch(XmlRpcCaller.java:440)
	at org.openmicroscopy.ds.DataFactory.updateList(DataFactory.java:693)
	at org.openmicroscopy.ds.DataFactory.updateMarked(DataFactory.java:743)
	at TestImport.main(TestImport.java:257)
	at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
	at 
sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:39)
	at 
sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25)
	at java.lang.reflect.Method.invoke(Method.java:585)
	at com.intellij.rt.execution.application.AppMain.main(AppMain.java:78)


-- 
Stefan Frank
iBioS - Intelligent BioInformatics Systems
http://www.dkfz-heidelberg.de/ibios
DKFZ - German Cancer Research Center
Im Neuenheimer Feld 580
69120 Heidelberg
Tel.: +49 (0) 6221 42-3612
Mail: s.frank at dkfz-heidelberg.de