[ome-devel] Import again...

[Ilya Goldberg]

Did you take a look at Bug 169?
http://bugs.openmicroscopy.org.uk/show_bug.cgi?id=169
I added you to the cc list for this bug.

If a regular expression can be used to parse Z/C/T info from file 
names, then a solution is coming.  This will be a back-end solution, 
meaning the RE will be loaded from XML (ST magic again), and your 
back-end will not be able to stitch these images together.
-Ilya

On Aug 19, 2004, at 10:40 AM, Stefan Frank wrote:

> Hi folks,
>
> we're still struggling with the import of images and are pursuing 
> different paths for importing files - apart from hacking the 
> perl-import-scripts(glad to have put this on josh's list, not mine), I 
> went through the different approaches using the XML-RPC from java: As 
> far as I can see, we have several duplicate Codebases here that do 
> (part of) the Job: We have the TestImport from OME-JAVA, there is the 
> code in Visbio3 that started out with copying TestImport-Code and I 
> even remember to have seen first Steps towards an import from inside 
> Shoola.
>
> On the 
> docs-site(http://www.openmicroscopy.org/system-admin/import.html), 
> there is already a marriage between visbio and the Import-Module 
> announced - what is the state of this marriage? VisBio is pretty cool 
> on the import- side, with a clever way of determining the files that 
> belong together, however, we need a Command-Line-Interface, preferably 
> tweakable via parameters to set the z/time/channel-patterns. We'd like 
> to put this into a cron-job and upload files from a given directory 
> over night. Or is this already possible with Visbio3?!
>
> Is anybody already doing this?! I do not want to add another 
> code-base, but I think refactoring the TestImport.java from OME-JAVA, 
> adding cli to it,  and then taking this together with the 
> VisBio-Classes would do the trick - maybe we can come up with classes 
> that can be used inside Shoola for the import, too?!
>
> cheers
> stefan
>
> -- 
> Stefan Frank
> iBioS - Intelligent BioInformatics Systems
> http://www.dkfz-heidelberg.de/ibios
> DKFZ - German Cancer Research Center
> Im Neuenheimer Feld 580
> 69120 Heidelberg
> Tel.: +49 (0) 6221 42-3612
> Mail: s.frank at dkfz-heidelberg.de
>
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