[ome-users] .vsi file conversion to .tiff getting exception error

Mousumi Roy mousumi.roy at stonybrook.edu
Tue Jun 19 17:09:24 BST 2018


Hello,

I am using bftools and trying to convert .vsi images into .tiff using
*bfconvert* command line tool
<https://docs.openmicroscopy.org/bio-formats/5.7.1/users/comlinetools/index.html>.
But I am getting following error:







* Exception in thread "main" loci.formats.FormatException: Plane index:1
must be < 1at
loci.formats.FormatWriter.checkParams(FormatWriter.java:387)at
loci.formats.out.TiffWriter.saveBytes(TiffWriter.java:215)at
loci.formats.tools.ImageConverter.convertTilePlane(ImageConverter.java:748)at
loci.formats.tools.ImageConverter.convertPlane(ImageConverter.java:634)at
loci.formats.tools.ImageConverter.testConvert(ImageConverter.java:563)at
loci.formats.tools.ImageConverter.main(ImageConverter.java:884) *

I have 40x .vsi files which I need to convert into .tiff format but it
seems I am not able to convert without compression. Kindly assist me.

Thank you. Looking forward to your response.

Sincerely,
Mousumi Roy
*Graduate Research assistant*
Computer Science
Stony Brook University
m: 6316275860
a: 100 Nicolls Rd, Stony Brook, NY 11794
e: mousumi.roy at stonybrook.edu
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