[ome-users] .vsi file conversion to .tiff getting exception error

[David Gault (Staff)]

Hi Mousumi,

Thank you for reporting the issue, this is not a bug which we are aware of with VSI, as such it would be good to have a file that reproduces the problem for testing and debugging. If you have a sample file which you can provide for testing you can upload it to https://www.openmicroscopy.org/qa2/qa/upload/

With Thanks,
David Gault

On 19 Jun 2018, at 17:09, Mousumi Roy <mousumi.roy at stonybrook.edu<mailto:mousumi.roy at stonybrook.edu>> wrote:


Hello,

I am using bftools and trying to convert .vsi images into .tiff using  bfconvert command line tool<https://docs.openmicroscopy.org/bio-formats/5.7.1/users/comlinetools/index.html>. But I am getting following error:
Exception in thread "main" loci.formats.FormatException: Plane index:1 must be < 1
at loci.formats.FormatWriter.checkParams(FormatWriter.java:387)
at loci.formats.out.TiffWriter.saveBytes(TiffWriter.java:215)
at loci.formats.tools.ImageConverter.convertTilePlane(ImageConverter.java:748)
at loci.formats.tools.ImageConverter.convertPlane(ImageConverter.java:634)
at loci.formats.tools.ImageConverter.testConvert(ImageConverter.java:563)
at loci.formats.tools.ImageConverter.main(ImageConverter.java:884)

I have 40x .vsi files which I need to convert into .tiff format but it seems I am not able to convert without compression. Kindly assist me.

Thank you. Looking forward to your response.

Sincerely,
Mousumi Roy
Graduate Research assistant
Computer Science
Stony Brook University
m:      6316275860
a:      100 Nicolls Rd, Stony Brook, NY 11794
e:      mousumi.roy at stonybrook.edu<mailto:mousumi.roy at stonybrook.edu>
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