[ome-users] How to get pixel size by Bioformats

Qi Gong qigong at gwmail.gwu.edu
Tue Sep 18 23:43:45 BST 2018


Got it! Thank you David.

On Tue, Sep 18, 2018 at 4:27 PM, David Gault (Staff) <d.gault at dundee.ac.uk>
wrote:

> Hi Qi,
>
> You can find a MATLAB example of how to retrieve the physical pixel size
> in the following link:
> https://docs.openmicroscopy.org/bio-formats/5.9.2/
> developers/matlab-dev.html#ome-metadata
>
> With Thanks,
> David Gault
>
> On 18 Sep 2018, at 20:02, Qi Gong <qigong at gwmail.gwu.edu> wrote:
>
> Hieveryone,
>
> We use Bioformats to load WSI in matlab. Does anyone know what function we
> can use to get image pixel size (MMP: micrometer per pixel). I found this
> website (http://downloads.openmicroscopy.org/bio-formats-cpp/5.1.8/api/
> classome_1_1bioformats_1_1FormatReader.html#a2cf69551b1f0592ad1302195004cb
> aad), but didn't find an  apposite function. Thank you.
>
> Regards,
> Qi
>
>
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