[ome-users] OMERO.web login problem
Jens Eriksson
jenseri at gmail.com
Wed Oct 31 15:54:23 GMT 2018
Thank you so much for helping me with this, it's really driving me insane.
Here is the OMERO.server config, and the outputs from master.err
(master.out is empty) and the errors from Blitz-0.log.
I'll upload the logs tomorrow, unless there is a way of doing it without
Adobe Flash.
There is not really anything that I can see in the provided logs.
/J
omero at frankencloud:~$ OMERO.server/bin/omero config get
omero.data.dir=/tank/OMERO
omero.db.name=omero_database
omero.db.pass=********
omero.db.poolsize=100
omero.db.user=db_user_omero
omero.jvmcfg.strategy=percent
omero at frankencloud:~$ cat OMERO.server/var/log/Blitz-0.log | grep ERR
2018-10-24 11:43:01,916 ERROR [ ome.services.util.ServiceHandler]
(2-thread-3) Method interface ome.services.util.Executor$Work.doWork
invocation took 36057
2018-10-24 16:01:31,808 ERROR [ ome.system.UpgradeCheck] (
main) Unknown host:http://upgrade.openmicroscopy.org.uk
2018-10-24 16:40:54,209 ERROR [ ome.system.UpgradeCheck] (
main) Unknown host:http://upgrade.openmicroscopy.org.uk
2018-10-25 15:40:25,904 ERROR [ omero.cmd.SessionI]
(.Server-10) Error destroying servant:
1a99b5bf-f9d8-49fc-b64c-f48bfef6930comero.grid.SharedResources=ome.services.blitz.impl.SharedResourcesI at a2251c0
2018-10-26 10:44:55,353 ERROR [ ome.services.util.ServiceHandler]
(2-thread-2) Method interface ome.services.util.Executor$Work.doWork
invocation took 29972
2018-10-26 10:45:37,456 ERROR [ ome.services.util.ServiceHandler]
(2-thread-5) Method interface ome.services.util.Executor$Work.doWork
invocation took 30405
2018-10-26 10:46:19,106 ERROR [ ome.services.util.ServiceHandler]
(2-thread-1) Method interface ome.services.util.Executor$Work.doWork
invocation took 30323
2018-10-26 10:47:00,522 ERROR [ ome.services.util.ServiceHandler]
(2-thread-2) Method interface ome.services.util.Executor$Work.doWork
invocation took 30454
2018-10-26 10:47:41,754 ERROR [ ome.services.util.ServiceHandler]
(2-thread-3) Method interface ome.services.util.Executor$Work.doWork
invocation took 30188
2018-10-26 10:48:23,176 ERROR [ ome.services.util.ServiceHandler]
(2-thread-3) Method interface ome.services.util.Executor$Work.doWork
invocation took 30187
2018-10-26 10:49:05,574 ERROR [ ome.services.util.ServiceHandler]
(2-thread-1) Method interface ome.services.util.Executor$Work.doWork
invocation took 30790
2018-10-26 10:49:48,024 ERROR [ ome.services.util.ServiceHandler]
(2-thread-5) Method interface ome.services.util.Executor$Work.doWork
invocation took 30401
2018-10-26 10:50:30,780 ERROR [ ome.services.util.ServiceHandler]
(2-thread-2) Method interface ome.services.util.Executor$Work.doWork
invocation took 30325
2018-10-26 10:51:14,736 ERROR [ ome.services.util.ServiceHandler]
(2-thread-3) Method interface ome.services.util.Executor$Work.doWork
invocation took 30535
2018-10-26 10:51:58,106 ERROR [ ome.services.util.ServiceHandler]
(2-thread-1) Method interface ome.services.util.Executor$Work.doWork
invocation took 30173
2018-10-26 10:52:40,967 ERROR [ ome.services.util.ServiceHandler]
(2-thread-2) Method interface ome.services.util.Executor$Work.doWork
invocation took 28965
2018-10-26 10:53:44,175 ERROR [ ome.services.util.ServiceHandler]
(2-thread-1) Method interface ome.services.util.Executor$Work.doWork
invocation took 26933
2018-10-26 11:01:38,832 ERROR [ ome.services.util.ServiceHandler]
(2-thread-4) Method interface ome.services.util.Executor$Work.doWork
invocation took 22511
2018-10-26 11:03:41,881 ERROR [ ome.services.util.ServiceHandler]
(2-thread-1) Method interface ome.services.util.Executor$Work.doWork
invocation took 57472
2018-10-26 11:04:05,646 ERROR [ ome.services.util.ServiceHandler]
(2-thread-4) Method interface ome.services.util.Executor$Work.doWork
invocation took 25427
2018-10-26 11:04:53,223 ERROR [ ome.services.util.ServiceHandler]
(2-thread-2) Method interface ome.services.util.Executor$Work.doWork
invocation took 265678
2018-10-26 11:06:47,713 ERROR [ ome.services.util.ServiceHandler]
(2-thread-2) Method interface ome.services.util.Executor$Work.doWork
invocation took 37714
2018-10-26 11:09:20,021 ERROR [ ome.services.util.ServiceHandler]
(2-thread-2) Method interface ome.services.util.Executor$Work.doWork
invocation took 47526
2018-10-26 11:10:46,356 ERROR [ ome.services.util.ServiceHandler]
(2-thread-1) Method interface ome.services.util.Executor$Work.doWork
invocation took 47507
2018-10-26 11:12:28,272 ERROR [ ome.services.util.ServiceHandler]
(2-thread-2) Method interface ome.services.util.Executor$Work.doWork
invocation took 47517
2018-10-26 11:13:48,282 ERROR [ ome.services.util.ServiceHandler]
(2-thread-5) Method interface ome.services.util.Executor$Work.doWork
invocation took 47357
2018-10-26 11:15:08,084 ERROR [ ome.services.util.ServiceHandler]
(2-thread-2) Method interface ome.services.util.Executor$Work.doWork
invocation took 46742
2018-10-26 11:16:14,128 ERROR [ ome.services.util.ServiceHandler]
(2-thread-3) Method interface ome.services.util.Executor$Work.doWork
invocation took 46333
2018-10-26 11:17:48,865 ERROR [ ome.services.util.ServiceHandler]
(2-thread-3) Method interface ome.services.util.Executor$Work.doWork
invocation took 44539
2018-10-26 11:37:45,653 ERROR [ ome.services.util.ServiceHandler]
(2-thread-1) Method interface ome.services.util.Executor$Work.doWork
invocation took 25861
2018-10-26 11:38:16,401 ERROR [ ome.services.util.ServiceHandler]
(2-thread-4) Method interface ome.services.util.Executor$Work.doWork
invocation took 34381
2018-10-26 11:38:24,530 ERROR [ ome.services.util.ServiceHandler]
(2-thread-2) Method interface ome.services.util.Executor$Work.doWork
invocation took 25862
2018-10-26 11:38:47,376 ERROR [ ome.services.util.ServiceHandler]
(2-thread-4) Method interface ome.services.util.Executor$Work.doWork
invocation took 20177
2018-10-26 11:46:53,337 ERROR [ ome.services.util.ServiceHandler]
(2-thread-5) Method interface ome.services.util.Executor$Work.doWork
invocation took 688988
2018-10-26 16:47:41,011 ERROR [ ome.services.util.ServiceHandler]
(2-thread-1) Method interface ome.services.util.Executor$Work.doWork
invocation took 32420
2018-10-26 16:48:48,937 ERROR [ ome.services.util.ServiceHandler]
(2-thread-5) Method interface ome.services.util.Executor$Work.doWork
invocation took 34025
2018-10-26 16:51:00,665 ERROR [ ome.services.util.ServiceHandler]
(2-thread-4) Method interface ome.services.util.Executor$Work.doWork
invocation took 34483
2018-10-29 10:40:21,317 ERROR [ ome.services.util.ServiceHandler]
(2-thread-5) Method interface ome.services.util.Executor$Work.doWork
invocation took 312551
2018-10-29 10:44:15,660 ERROR [ ome.services.util.ServiceHandler]
(2-thread-4) Method interface ome.services.util.Executor$Work.doWork
invocation took 21411
2018-10-29 16:07:36,367 INFO [ o.c.a.ResetPasswordRequestI. at 59bb2d91]
(2-thread-4) notify cancelled: omero.cmd.ERR at 72073a15
/omero.cmd.Status at 64113dc3
2018-10-29 16:07:36,380 INFO [ o.c.a.ResetPasswordRequestI. at 59bb2d91]
(.Server-39) notify cancelled: omero.cmd.ERR at 72073a15
/omero.cmd.Status at 64113dc3
omero at frankencloud:~$ cat OMERO.server/var/log/master.err
Oct 22, 2018 6:47:27 PM java.util.prefs.FileSystemPreferences$1 run
INFO: Created user preferences directory.
-! 10/23/18 11:45:19.424 icegridnode: warning: exception occurred while
deactivating `OMERO.Glacier2' using process proxy:
Network.cpp:2357: Ice::ConnectionRefusedException:
connection refused: Connection refused
-! 10/23/18 11:45:19.425 icegridnode: warning: exception occurred while
deactivating `OMERO.IceStorm' using process proxy:
Network.cpp:2357: Ice::ConnectionRefusedException:
connection refused: Connection refused
!! 10/23/18 11:45:19.608 error: communicator not destroyed during global
destruction.!! 10/23/18 13:20:11.369 error: communicator not destroyed
during global destruction.-! 10/24/18 11:40:53.911 icegridnode: warning:
exception occurred while deactivating `OMERO.Glacier2' using process proxy:
Network.cpp:2357: Ice::ConnectionRefusedException:
connection refused: Connection refused
-! 10/24/18 11:40:53.911 icegridnode: warning: exception occurred while
deactivating `OMERO.IceStorm' using process proxy:
Network.cpp:2357: Ice::ConnectionRefusedException:
connection refused: Connection refused
!! 10/24/18 11:40:54.294 error: communicator not destroyed during global
destruction.-! 10/24/18 15:54:38.959 icegridnode: warning: exception
occurred while deactivating `OMERO.IceStorm' using process proxy:
Network.cpp:2357: Ice::ConnectionRefusedException:
connection refused: Connection refused
-! 10/24/18 15:54:38.960 icegridnode: warning: exception occurred while
deactivating `OMERO.Glacier2' using process proxy:
Network.cpp:2357: Ice::ConnectionRefusedException:
connection refused: Connection refused
-! 10/24/18 15:54:38:971 warning: Blitz-0-Ice.ThreadPool.Server-41:
dispatch exception:
identity:
session-9795340b-fa8b-4d9a-af63-f0f2cd57ba01/1823dd68-afb4-450d-bfcf-c5fda7c9c06c
facet:
operation: destroy
remote host: 130.238.46.98 remote port: 34148
Ice.ObjectAdapterDeactivatedException
name = "BlitzAdapter"
at Ice.ObjectAdapterI.checkForDeactivation(ObjectAdapterI.java:1170)
at Ice.ObjectAdapterI.findFacet(ObjectAdapterI.java:498)
at Ice.ObjectAdapterI.find(ObjectAdapterI.java:491)
at omero.cmd.SessionI.unregisterServant(SessionI.java:651)
at omero.cmd.SessionI.cleanServants(SessionI.java:454)
at omero.cmd.SessionI.cleanServants(SessionI.java:384)
at omero.cmd.SessionI.doDestroy(SessionI.java:374)
at omero.cmd.SessionI.destroy(SessionI.java:302)
at omero.api._ServiceFactoryTie.destroy(_ServiceFactoryTie.java:65)
at Glacier2._SessionDisp.___destroy(_SessionDisp.java:94)
at
omero.api._ServiceFactoryDisp.__dispatch(_ServiceFactoryDisp.java:1263)
at IceInternal.Incoming.invoke(Incoming.java:221)
at Ice.ConnectionI.invokeAll(ConnectionI.java:2536)
at Ice.ConnectionI.dispatch(ConnectionI.java:1145)
at Ice.ConnectionI.message(ConnectionI.java:1056)
at IceInternal.ThreadPool.run(ThreadPool.java:395)
at IceInternal.ThreadPool.access$300(ThreadPool.java:12)
at
IceInternal.ThreadPool$EventHandlerThread.run(ThreadPool.java:832)
at java.lang.Thread.run(Thread.java:748)
-! 10/24/18 15:54:38:970 warning: Blitz-0-Ice.ThreadPool.Server-36:
dispatch exception:
identity:
session-9fc728a1-93c0-4fef-84c6-1e4ccaf1865d/4a1b1bef-86f7-4f36-a384-6fa003e62e39
facet:
operation: destroy
remote host: 130.238.46.98 remote port: 34150
Ice.ObjectAdapterDeactivatedException
name = "BlitzAdapter"
at Ice.ObjectAdapterI.checkForDeactivation(ObjectAdapterI.java:1170)
at Ice.ObjectAdapterI.findFacet(ObjectAdapterI.java:498)
at Ice.ObjectAdapterI.find(ObjectAdapterI.java:491)
at omero.cmd.SessionI.unregisterServant(SessionI.java:651)
at omero.cmd.SessionI.cleanServants(SessionI.java:454)
at omero.cmd.SessionI.cleanServants(SessionI.java:384)
at omero.cmd.SessionI.doDestroy(SessionI.java:374)
at omero.cmd.SessionI.destroy(SessionI.java:302)
at omero.api._ServiceFactoryTie.destroy(_ServiceFactoryTie.java:65)
at Glacier2._SessionDisp.___destroy(_SessionDisp.java:94)
at
omero.api._ServiceFactoryDisp.__dispatch(_ServiceFactoryDisp.java:1263)
at IceInternal.Incoming.invoke(Incoming.java:221)
at Ice.ConnectionI.invokeAll(ConnectionI.java:2536)
at Ice.ConnectionI.dispatch(ConnectionI.java:1145)
at Ice.ConnectionI.message(ConnectionI.java:1056)
at IceInternal.ThreadPool.run(ThreadPool.java:395)
at IceInternal.ThreadPool.access$300(ThreadPool.java:12)
at
IceInternal.ThreadPool$EventHandlerThread.run(ThreadPool.java:832)
at java.lang.Thread.run(Thread.java:748)
!! 10/24/18 15:54:39.050 error: communicator not destroyed during global
destruction.-! 10/24/18 16:01:24.760 icegridnode: warning: failed to join
the multicast group for IceGrid discovery:
endpoints = udp -h "239.255.0.1" -p 4061
Network.cpp:1859: Ice::SocketException:
socket exception: No such device
-! 10/24/18 16:09:16.352 icegridnode: warning: exception occurred while
deactivating `OMERO.IceStorm' using process proxy:
Network.cpp:2357: Ice::ConnectionRefusedException:
connection refused: Connection refused
-! 10/24/18 16:09:16.353 icegridnode: warning: exception occurred while
deactivating `OMERO.Glacier2' using process proxy:
Network.cpp:2357: Ice::ConnectionRefusedException:
connection refused: Connection refused
-! 10/24/18 16:09:16:397 warning: Blitz-0-Ice.ThreadPool.Server-8: dispatch
exception:
identity:
session-6b461b4d-4328-4682-8b33-09350af07a5d/4792b70e-7198-41ea-bb6d-0a118d4e6f64
facet:
operation: destroy
remote host: 127.0.0.1 remote port: 41696
Ice.ObjectAdapterDeactivatedException
name = "BlitzAdapter"
at Ice.ObjectAdapterI.checkForDeactivation(ObjectAdapterI.java:1170)
at Ice.ObjectAdapterI.findFacet(ObjectAdapterI.java:498)
at Ice.ObjectAdapterI.find(ObjectAdapterI.java:491)
at omero.cmd.SessionI.unregisterServant(SessionI.java:651)
at omero.cmd.SessionI.cleanServants(SessionI.java:454)
at omero.cmd.SessionI.cleanServants(SessionI.java:384)
at omero.cmd.SessionI.doDestroy(SessionI.java:374)
at omero.cmd.SessionI.destroy(SessionI.java:302)
at omero.api._ServiceFactoryTie.destroy(_ServiceFactoryTie.java:65)
at Glacier2._SessionDisp.___destroy(_SessionDisp.java:94)
at
omero.api._ServiceFactoryDisp.__dispatch(_ServiceFactoryDisp.java:1263)
at IceInternal.Incoming.invoke(Incoming.java:221)
at Ice.ConnectionI.invokeAll(ConnectionI.java:2536)
at Ice.ConnectionI.dispatch(ConnectionI.java:1145)
at Ice.ConnectionI.message(ConnectionI.java:1056)
at IceInternal.ThreadPool.run(ThreadPool.java:395)
at IceInternal.ThreadPool.access$300(ThreadPool.java:12)
at
IceInternal.ThreadPool$EventHandlerThread.run(ThreadPool.java:832)
at java.lang.Thread.run(Thread.java:748)
-! 10/24/18 16:09:16:396 warning: Blitz-0-Ice.ThreadPool.Server-10:
dispatch exception:
identity:
session-d4b1b636-7952-47ed-8604-2eeec8d38b82/02ce8793-eb34-4745-952b-16e1b32e70cd
facet:
operation: destroy
remote host: 0:0:0:0:0:0:0:1 remote port: 37742
Ice.ObjectAdapterDeactivatedException
name = "BlitzAdapter"
at Ice.ObjectAdapterI.checkForDeactivation(ObjectAdapterI.java:1170)
at Ice.ObjectAdapterI.findFacet(ObjectAdapterI.java:498)
at Ice.ObjectAdapterI.find(ObjectAdapterI.java:491)
at omero.cmd.SessionI.unregisterServant(SessionI.java:651)
at omero.cmd.SessionI.cleanServants(SessionI.java:454)
at omero.cmd.SessionI.cleanServants(SessionI.java:384)
at omero.cmd.SessionI.doDestroy(SessionI.java:374)
at omero.cmd.SessionI.destroy(SessionI.java:302)
at omero.api._ServiceFactoryTie.destroy(_ServiceFactoryTie.java:65)
at Glacier2._SessionDisp.___destroy(_SessionDisp.java:94)
at
omero.api._ServiceFactoryDisp.__dispatch(_ServiceFactoryDisp.java:1263)
at IceInternal.Incoming.invoke(Incoming.java:221)
at Ice.ConnectionI.invokeAll(ConnectionI.java:2536)
at Ice.ConnectionI.dispatch(ConnectionI.java:1145)
at Ice.ConnectionI.message(ConnectionI.java:1056)
at IceInternal.ThreadPool.run(ThreadPool.java:395)
at IceInternal.ThreadPool.access$300(ThreadPool.java:12)
at
IceInternal.ThreadPool$EventHandlerThread.run(ThreadPool.java:832)
at java.lang.Thread.run(Thread.java:748)
!! 10/24/18 16:09:16.511 error: communicator not destroyed during global
destruction.-! 10/24/18 16:40:46.919 icegridnode: warning: failed to join
the multicast group for IceGrid discovery:
endpoints = udp -h "239.255.0.1" -p 4061
Network.cpp:1859: Ice::SocketException:
socket exception: No such device
!! 10/25/18 14:44:04.625 error: communicator not destroyed during global
destruction.-! 10/25/18 15:40:25:903 warning:
Blitz-0-Ice.ThreadPool.Server-4: dispatch exception:
identity:
session-701ec8c3-0e53-4164-90fb-224e952b1bb6/6068e95d-a9e5-4ac8-8acd-66b34030e0d4
facet:
operation: destroy
remote host: 130.238.46.98 remote port: 37082
Ice.ObjectAdapterDeactivatedException
name = "BlitzAdapter"
at Ice.ObjectAdapterI.checkForDeactivation(ObjectAdapterI.java:1170)
at Ice.ObjectAdapterI.findFacet(ObjectAdapterI.java:498)
at Ice.ObjectAdapterI.find(ObjectAdapterI.java:491)
at omero.cmd.SessionI.unregisterServant(SessionI.java:651)
at omero.cmd.SessionI.cleanServants(SessionI.java:454)
at omero.cmd.SessionI.cleanServants(SessionI.java:384)
at omero.cmd.SessionI.doDestroy(SessionI.java:374)
at omero.cmd.SessionI.destroy(SessionI.java:302)
at omero.api._ServiceFactoryTie.destroy(_ServiceFactoryTie.java:65)
at Glacier2._SessionDisp.___destroy(_SessionDisp.java:94)
at
omero.api._ServiceFactoryDisp.__dispatch(_ServiceFactoryDisp.java:1263)
at IceInternal.Incoming.invoke(Incoming.java:221)
at Ice.ConnectionI.invokeAll(ConnectionI.java:2536)
at Ice.ConnectionI.dispatch(ConnectionI.java:1145)
at Ice.ConnectionI.message(ConnectionI.java:1056)
at IceInternal.ThreadPool.run(ThreadPool.java:395)
at IceInternal.ThreadPool.access$300(ThreadPool.java:12)
at
IceInternal.ThreadPool$EventHandlerThread.run(ThreadPool.java:832)
at java.lang.Thread.run(Thread.java:748)
-! 10/25/18 15:40:25:905 warning: Blitz-0-Ice.ThreadPool.Server-10:
dispatch exception:
identity:
session-1a99b5bf-f9d8-49fc-b64c-f48bfef6930c/2d172bfb-ebda-47f3-8e69-139e28b69564
facet:
operation: destroy
remote host: 130.238.46.98 remote port: 37084
Ice.ObjectAdapterDeactivatedException
name = "BlitzAdapter"
at Ice.ObjectAdapterI.checkForDeactivation(ObjectAdapterI.java:1170)
at Ice.ObjectAdapterI.findFacet(ObjectAdapterI.java:498)
at Ice.ObjectAdapterI.find(ObjectAdapterI.java:491)
at omero.cmd.SessionI.unregisterServant(SessionI.java:651)
at omero.cmd.SessionI.cleanServants(SessionI.java:454)
at omero.cmd.SessionI.cleanServants(SessionI.java:384)
at omero.cmd.SessionI.doDestroy(SessionI.java:374)
at omero.cmd.SessionI.destroy(SessionI.java:302)
at omero.api._ServiceFactoryTie.destroy(_ServiceFactoryTie.java:65)
at Glacier2._SessionDisp.___destroy(_SessionDisp.java:94)
at
omero.api._ServiceFactoryDisp.__dispatch(_ServiceFactoryDisp.java:1263)
at IceInternal.Incoming.invoke(Incoming.java:221)
at Ice.ConnectionI.invokeAll(ConnectionI.java:2536)
at Ice.ConnectionI.dispatch(ConnectionI.java:1145)
at Ice.ConnectionI.message(ConnectionI.java:1056)
at IceInternal.ThreadPool.run(ThreadPool.java:395)
at IceInternal.ThreadPool.access$300(ThreadPool.java:12)
at
IceInternal.ThreadPool$EventHandlerThread.run(ThreadPool.java:832)
at java.lang.Thread.run(Thread.java:748)
!! 10/25/18 15:40:25.981 error: communicator not destroyed during global
destruction.!! 10/30/18 09:56:24.340 error: communicator not destroyed
during global destruction.!! 10/30/18 10:59:34.561 error: communicator not
destroyed during global destruction.-! 10/30/18 11:07:59:780 warning:
Blitz-0-Ice.ThreadPool.Server-10: dispatch exception:
identity:
session-01bbf860-5ddc-4333-8b4d-6dba4c6466f0/2f093ce1-aa0b-4328-bb39-9147391d40b5
facet:
operation: destroy
remote host: 130.238.46.98 remote port: 41308
Ice.ObjectAdapterDeactivatedException
name = "BlitzAdapter"
at Ice.ObjectAdapterI.checkForDeactivation(ObjectAdapterI.java:1170)
at Ice.ObjectAdapterI.findFacet(ObjectAdapterI.java:498)
at Ice.ObjectAdapterI.find(ObjectAdapterI.java:491)
at omero.cmd.SessionI.unregisterServant(SessionI.java:651)
at omero.cmd.SessionI.cleanServants(SessionI.java:454)
at omero.cmd.SessionI.cleanServants(SessionI.java:384)
at omero.cmd.SessionI.doDestroy(SessionI.java:374)
at omero.cmd.SessionI.destroy(SessionI.java:302)
at omero.api._ServiceFactoryTie.destroy(_ServiceFactoryTie.java:65)
at Glacier2._SessionDisp.___destroy(_SessionDisp.java:94)
at
omero.api._ServiceFactoryDisp.__dispatch(_ServiceFactoryDisp.java:1263)
at IceInternal.Incoming.invoke(Incoming.java:221)
at Ice.ConnectionI.invokeAll(ConnectionI.java:2536)
at Ice.ConnectionI.dispatch(ConnectionI.java:1145)
at Ice.ConnectionI.message(ConnectionI.java:1056)
at IceInternal.ThreadPool.run(ThreadPool.java:395)
at IceInternal.ThreadPool.access$300(ThreadPool.java:12)
at
IceInternal.ThreadPool$EventHandlerThread.run(ThreadPool.java:832)
at java.lang.Thread.run(Thread.java:748)
!! 10/30/18 11:07:59.840 error: communicator not destroyed during global
destruction.
On Wed, Oct 31, 2018 at 4:14 PM Simon Li <spli at dundee.ac.uk> wrote:
> I can't see any obvious problems. The two entries in your Nginx error.log
> are fine, OMERO.web let's you fetch files from the statics directory but
> doesn't let you list them, and the missing favicon is fine.
>
> Could you post your OMERO.server config, and check your OMERO.server logs
> for errors, in particular master.* and Blitz-0.log? If you can't see
> anything useful could you upload all your logs (OMERO.server and OMERO.web)
> to https://www.openmicroscopy.org/qa2/ ?
>
> Best wishes, Simon
>
>
>
> On Tue, 30 Oct 2018 at 14:51, Jens Eriksson <jenseri at gmail.com> wrote:
>
>> Nothing odd pops out in the nginx access.log.
>>
>> In the Nginx error.log there are two entries that may be intreresting:
>> 2018/10/30 10:56:40 [error] 93526#93526: *80 directory index of
>> "/home/omero/OMERO.py/lib/python/omeroweb/static/" is forbidden, client:
>> 130.238.46.201, server: localhost, request: "GET /omero/static/ HTTP/1.1",
>> host: "frankencloud.imbim.uu.se"
>> 2018/10/30 13:59:31 [error] 93528#93528: *111 open()
>> "/usr/share/nginx/html/favicon.ico" failed (2: No such file or directory),
>> client: 130.238.46.81, server: localhost, request: "GET /favicon.ico
>> HTTP/1.1", host: "frankencloud.imbim.uu.se"
>>
>> frankencloud.imbim.uu.se is the server on out local network.
>>
>> Restarting OMERO.web with omero.web.debug set True and reading through
>> the OMEROweb.log does not give any new insights. I appended it to the end
>> of the email, in case you see something I don't.
>>
>> Logging in via OMERO.py/bin/omero login seems to work fine:
>>
>> (omerowebvenv) omero at frankencloud:~$ OMERO.py/bin/omero login
>> Server: [localhost:4064]
>> Username: [omero]root
>> Password:
>> Created session for root at localhost:4064. Idle timeout: 10 min. Current
>> group: system
>>
>>
>>
>> omero at frankencloud:~$ cat OMERO.py/var/log/OMEROweb.log
>> 2018-10-30 14:22:30,320 INFO [ __main__]
>> (MainThread) Application Starting...
>> 2018-10-30 14:22:30,325 INFO [ root]
>> (MainThread) Processing custom settings for module omeroweb.settings
>> 2018-10-30 14:22:30,325 INFO [ root]
>> (MainThread) Processing custom settings for module omeroweb.settings
>> 2018-10-30 14:22:30,326 INFO [ root]
>> (MainThread) Processing custom settings for module omeroweb.settings
>> 2018-10-30 14:22:30,326 DEBUG [ omeroweb.settings]
>> (MainThread) ADMINS = [] (source:default)
>> 2018-10-30 14:22:30,326 DEBUG [ omeroweb.settings]
>> (MainThread) APPLICATION_SERVER = 'wsgi-tcp'
>> (source:omero.web.application_server)
>> 2018-10-30 14:22:30,326 DEBUG [ omeroweb.settings]
>> (MainThread) APPLICATION_SERVER_HOST = '127.0.0.1' (source:default)
>> 2018-10-30 14:22:30,326 DEBUG [ omeroweb.settings]
>> (MainThread) APPLICATION_SERVER_MAX_REQUESTS = 500
>> (source:omero.web.application_server.max_requests)
>> 2018-10-30 14:22:30,326 DEBUG [ omeroweb.settings]
>> (MainThread) APPLICATION_SERVER_PORT = 4080 (source:default)
>> 2018-10-30 14:22:30,326 DEBUG [ omeroweb.settings]
>> (MainThread) ADDITIONAL_APPS = [u'omero_figure', u'omero_iviewer']
>> (source:omero.web.apps)
>> 2018-10-30 14:22:30,326 DEBUG [ omeroweb.settings]
>> (MainThread) BASE_INCLUDE_TEMPLATE = None (source:default)
>> 2018-10-30 14:22:30,326 DEBUG [ omeroweb.settings]
>> (MainThread) CACHES = {u'default': {u'BACKEND':
>> u'django.core.cache.backends.dummy.DummyCache'}} (source:default)
>> 2018-10-30 14:22:30,326 DEBUG [ omeroweb.settings]
>> (MainThread) CHUNK_SIZE = 1048576 (source:default)
>> 2018-10-30 14:22:30,326 DEBUG [ omeroweb.settings]
>> (MainThread) CORS_ORIGIN_ALLOW_ALL = False (source:default)
>> 2018-10-30 14:22:30,326 DEBUG [ omeroweb.settings]
>> (MainThread) CORS_ORIGIN_WHITELIST = [] (source:default)
>> 2018-10-30 14:22:30,327 DEBUG [ omeroweb.settings]
>> (MainThread) DATABASES = {} (source:default)
>> 2018-10-30 14:22:30,327 DEBUG [ omeroweb.settings]
>> (MainThread) DEBUG = True (source:omero.web.debug)
>> 2018-10-30 14:22:30,327 DEBUG [ omeroweb.settings]
>> (MainThread) INDEX_TEMPLATE = None (source:default)
>> 2018-10-30 14:22:30,327 DEBUG [ omeroweb.settings]
>> (MainThread) LOGDIR = '/home/omero/OMERO.py/var/log' (source:default)
>> 2018-10-30 14:22:30,327 DEBUG [ omeroweb.settings]
>> (MainThread) LOGIN_LOGO = None (source:default)
>> 2018-10-30 14:22:30,327 DEBUG [ omeroweb.settings]
>> (MainThread) LOGIN_REDIRECT = {} (source:default)
>> 2018-10-30 14:22:30,327 DEBUG [ omeroweb.settings]
>> (MainThread) LOGIN_VIEW = 'weblogin' (source:default)
>> 2018-10-30 14:22:30,327 DEBUG [ omeroweb.settings]
>> (MainThread) MIDDLEWARE_CLASSES_LIST = [{u'index': 1, u'class':
>> u'django.middleware.common.BrokenLinkEmailsMiddleware'}, {u'index': 2,
>> u'class': u'django.middleware.common.CommonMiddleware'}, {u'index': 3,
>> u'class': u'django.contrib.sessions.middleware.SessionMiddleware'},
>> {u'index': 4, u'class': u'django.middleware.csrf.CsrfViewMiddleware'},
>> {u'index': 5, u'class':
>> u'django.contrib.messages.middleware.MessageMiddleware'}, {u'index': 0,
>> u'class': u'whitenoise.middleware.WhiteNoiseMiddleware'}]
>> (source:omero.web.middleware)
>> 2018-10-30 14:22:30,327 DEBUG [ omeroweb.settings]
>> (MainThread) OPEN_WITH = [[u'Image viewer', u'webgateway',
>> {u'supported_objects': [u'image'], u'script_url':
>> u'webclient/javascript/ome.openwith_viewer.js'}], [u'omero_figure',
>> u'new_figure', {u'supported_objects': [u'images'], u'target': u'_blank',
>> u'label': u'OMERO.figure'}]] (source:omero.web.open_with)
>> 2018-10-30 14:22:30,327 DEBUG [ omeroweb.settings]
>> (MainThread) PAGE = 200 (source:default)
>> 2018-10-30 14:22:30,327 DEBUG [ omeroweb.settings]
>> (MainThread) PING_INTERVAL = 60000 (source:default)
>> 2018-10-30 14:22:30,327 DEBUG [ omeroweb.settings]
>> (MainThread) PIPELINE_CSS_COMPRESSOR = None (source:default)
>> 2018-10-30 14:22:30,327 DEBUG [ omeroweb.settings]
>> (MainThread) PIPELINE_JS_COMPRESSOR = None (source:default)
>> 2018-10-30 14:22:30,328 DEBUG [ omeroweb.settings]
>> (MainThread) STATICFILES_STORAGE = 'pipeline.storage.PipelineStorage'
>> (source:default)
>> 2018-10-30 14:22:30,328 DEBUG [ omeroweb.settings]
>> (MainThread) FORCE_SCRIPT_NAME = '/omero' (source:omero.web.prefix)
>> 2018-10-30 14:22:30,328 DEBUG [ omeroweb.settings]
>> (MainThread) PUBLIC_CACHE_ENABLED = False (source:default)
>> 2018-10-30 14:22:30,328 DEBUG [ omeroweb.settings]
>> (MainThread) PUBLIC_CACHE_KEY = u'********************' (source:default)
>> 2018-10-30 14:22:30,328 DEBUG [ omeroweb.settings]
>> (MainThread) PUBLIC_CACHE_TIMEOUT = 86400 (source:default)
>> 2018-10-30 14:22:30,328 DEBUG [ omeroweb.settings]
>> (MainThread) PUBLIC_ENABLED = False (source:default)
>> 2018-10-30 14:22:30,328 DEBUG [ omeroweb.settings]
>> (MainThread) PUBLIC_GET_ONLY = True (source:default)
>> 2018-10-30 14:22:30,328 DEBUG [ omeroweb.settings]
>> (MainThread) PUBLIC_PASSWORD = u'********************' (source:default)
>> 2018-10-30 14:22:30,328 DEBUG [ omeroweb.settings]
>> (MainThread) PUBLIC_SERVER_ID = 1 (source:default)
>> 2018-10-30 14:22:30,328 DEBUG [ omeroweb.settings]
>> (MainThread) PUBLIC_URL_FILTER = <_sre.SRE_Pattern object at
>> 0x7f9b4c618660> (source:default)
>> 2018-10-30 14:22:30,328 DEBUG [ omeroweb.settings]
>> (MainThread) PUBLIC_USER = None (source:default)
>> 2018-10-30 14:22:30,328 DEBUG [ omeroweb.settings]
>> (MainThread) SECRET_KEY = u'********************' (source:default)
>> 2018-10-30 14:22:30,328 DEBUG [ omeroweb.settings]
>> (MainThread) SECURE = False (source:default)
>> 2018-10-30 14:22:30,328 DEBUG [ omeroweb.settings]
>> (MainThread) SECURE_PROXY_SSL_HEADER = [] (source:default)
>> 2018-10-30 14:22:30,328 DEBUG [ omeroweb.settings]
>> (MainThread) SERVER_LIST = [[u'localhost', 4064, u'omero']] (source:default)
>> 2018-10-30 14:22:30,328 DEBUG [ omeroweb.settings]
>> (MainThread) SESSION_COOKIE_AGE = 86400 (source:default)
>> 2018-10-30 14:22:30,329 DEBUG [ omeroweb.settings]
>> (MainThread) SESSION_COOKIE_DOMAIN = None (source:default)
>> 2018-10-30 14:22:30,329 DEBUG [ omeroweb.settings]
>> (MainThread) SESSION_COOKIE_NAME = None (source:default)
>> 2018-10-30 14:22:30,329 DEBUG [ omeroweb.settings]
>> (MainThread) SESSION_ENGINE = 'django.contrib.sessions.backends.cache'
>> (source:omero.web.session_engine)
>> 2018-10-30 14:22:30,329 DEBUG [ omeroweb.settings]
>> (MainThread) SESSION_EXPIRE_AT_BROWSER_CLOSE = True (source:default)
>> 2018-10-30 14:22:30,329 DEBUG [ omeroweb.settings]
>> (MainThread) SHARING_OPENGRAPH = {} (source:default)
>> 2018-10-30 14:22:30,329 DEBUG [ omeroweb.settings]
>> (MainThread) SHARING_TWITTER = {} (source:default)
>> 2018-10-30 14:22:30,329 DEBUG [ omeroweb.settings]
>> (MainThread) STATIC_ROOT =
>> '/home/omero/OMERO.py/lib/python/omeroweb/static' (source:default)
>> 2018-10-30 14:22:30,329 DEBUG [ omeroweb.settings]
>> (MainThread) STATIC_URL = '/omero/static/' (source:omero.web.static_url)
>> 2018-10-30 14:22:30,329 DEBUG [ omeroweb.settings]
>> (MainThread) STATICFILES_DIRS = [] (source:default)
>> 2018-10-30 14:22:30,329 DEBUG [ omeroweb.settings]
>> (MainThread) TEMPLATE_DIRS = [] (source:default)
>> 2018-10-30 14:22:30,329 DEBUG [ omeroweb.settings]
>> (MainThread) THUMBNAILS_BATCH = 50 (source:default)
>> 2018-10-30 14:22:30,329 DEBUG [ omeroweb.settings]
>> (MainThread) CENTER_PLUGINS = [] (source:default)
>> 2018-10-30 14:22:30,329 DEBUG [ omeroweb.settings]
>> (MainThread) METADATA_PANES = [{u'index': 1, u'name': u'tag', u'label':
>> u'Tags'}, {u'index': 2, u'name': u'map', u'label': u'Key-Value Pairs'},
>> {u'index': 3, u'name': u'table', u'label': u'Tables'}, {u'index': 4,
>> u'name': u'file', u'label': u'Attachments'}, {u'index': 5, u'name':
>> u'comment', u'label': u'Comments'}, {u'index': 6, u'name': u'rating',
>> u'label': u'Ratings'}, {u'index': 7, u'name': u'other', u'label':
>> u'Others'}] (source:default)
>> 2018-10-30 14:22:30,329 DEBUG [ omeroweb.settings]
>> (MainThread) RIGHT_PLUGINS = [[u'Acquisition',
>> u'webclient/data/includes/right_plugin.acquisition.js.html',
>> u'metadata_tab'], [u'Preview',
>> u'webclient/data/includes/right_plugin.preview.js.html', u'preview_tab']]
>> (source:default)
>> 2018-10-30 14:22:30,329 DEBUG [ omeroweb.settings]
>> (MainThread) TOP_LINKS = [[u'Data', u'webindex', {u'title': u'Browse Data
>> via Projects, Tags etc'}], [u'History', u'history', {u'title':
>> u'History'}], [u'Help', u'https://help.openmicroscopy.org/', {u'target':
>> u'new', u'title': u'Open OMERO user guide in a new tab'}], [u'Figure',
>> u'figure_index', {u'target': u'_blank', u'title': u'Open Figure in new
>> tab'}]] (source:omero.web.ui.top_links)
>> 2018-10-30 14:22:30,330 DEBUG [ omeroweb.settings]
>> (MainThread) USE_X_FORWARDED_HOST = False (source:default)
>> 2018-10-30 14:22:30,330 DEBUG [ omeroweb.settings]
>> (MainThread) VIEWER_VIEW = 'omero_iviewer.views.index'
>> (source:omero.web.viewer.view)
>> 2018-10-30 14:22:30,330 DEBUG [ omeroweb.settings]
>> (MainThread) WEBGATEWAY_CACHE = None (source:default)
>> 2018-10-30 14:22:30,330 DEBUG [ omeroweb.settings]
>> (MainThread) WSGI_ARGS = None (source:default)
>> 2018-10-30 14:22:30,330 DEBUG [ omeroweb.settings]
>> (MainThread) WSGI_TIMEOUT = 60 (source:default)
>> 2018-10-30 14:22:30,330 DEBUG [ omeroweb.settings]
>> (MainThread) WSGI_WORKERS = 5 (source:default)
>> 2018-10-30 14:22:30,330 DEBUG [ omeroweb.settings]
>> (MainThread) Attempting to import additional app settings for app:
>> omero_figure
>> 2018-10-30 14:22:30,330 INFO [ root]
>> (MainThread) Processing custom settings for module omero_figure.settings
>> 2018-10-30 14:22:30,330 DEBUG [ omeroweb.settings]
>> (MainThread) Attempting to import additional app settings for app:
>> omero_iviewer
>> 2018-10-30 14:22:30,330 DEBUG [ omeroweb.settings]
>> (MainThread) Couldn't import settings from app: omero_iviewer
>> 2018-10-30 14:22:30,331 DEBUG [ omeroweb.settings]
>> (MainThread) INSTALLED_APPS=[('django.contrib.staticfiles',
>> 'django.contrib.auth', 'django.contrib.contenttypes',
>> 'django.contrib.sessions', 'django.contrib.sites', u'omero_figure',
>> u'omero_iviewer', 'omeroweb.feedback', 'omeroweb.webadmin',
>> 'omeroweb.webclient', 'omeroweb.webgateway', 'omeroweb.webredirect',
>> 'omeroweb.api', 'pipeline')]
>> 2018-10-30 13:22:30,441 WARNI [ py.warnings]
>> (proc.112125) <module>():9
>> /home/omero/omerowebvenv/local/lib/python2.7/site-packages/pipeline/utils.py:11:
>> RemovedInDjango19Warning: django.utils.importlib will be removed in Django
>> 1.9.
>> from django.utils import importlib
>>
>> 2018-10-30 14:22:31,299 INFO [ __main__]
>> (MainThread) Application Starting...
>> 2018-10-30 14:22:31,303 INFO [ root]
>> (MainThread) Processing custom settings for module omeroweb.settings
>> 2018-10-30 14:22:31,304 INFO [ root]
>> (MainThread) Processing custom settings for module omeroweb.settings
>> 2018-10-30 14:22:31,304 INFO [ root]
>> (MainThread) Processing custom settings for module omeroweb.settings
>> 2018-10-30 14:22:31,304 DEBUG [ omeroweb.settings]
>> (MainThread) ADMINS = [] (source:default)
>> 2018-10-30 14:22:31,304 DEBUG [ omeroweb.settings]
>> (MainThread) APPLICATION_SERVER = 'wsgi-tcp'
>> (source:omero.web.application_server)
>> 2018-10-30 14:22:31,304 DEBUG [ omeroweb.settings]
>> (MainThread) APPLICATION_SERVER_HOST = '127.0.0.1' (source:default)
>> 2018-10-30 14:22:31,304 DEBUG [ omeroweb.settings]
>> (MainThread) APPLICATION_SERVER_MAX_REQUESTS = 500
>> (source:omero.web.application_server.max_requests)
>> 2018-10-30 14:22:31,304 DEBUG [ omeroweb.settings]
>> (MainThread) APPLICATION_SERVER_PORT = 4080 (source:default)
>> 2018-10-30 14:22:31,305 DEBUG [ omeroweb.settings]
>> (MainThread) ADDITIONAL_APPS = [u'omero_figure', u'omero_iviewer']
>> (source:omero.web.apps)
>> 2018-10-30 14:22:31,305 DEBUG [ omeroweb.settings]
>> (MainThread) BASE_INCLUDE_TEMPLATE = None (source:default)
>> 2018-10-30 14:22:31,305 DEBUG [ omeroweb.settings]
>> (MainThread) CACHES = {u'default': {u'BACKEND':
>> u'django.core.cache.backends.dummy.DummyCache'}} (source:default)
>> 2018-10-30 14:22:31,305 DEBUG [ omeroweb.settings]
>> (MainThread) CHUNK_SIZE = 1048576 (source:default)
>> 2018-10-30 14:22:31,305 DEBUG [ omeroweb.settings]
>> (MainThread) CORS_ORIGIN_ALLOW_ALL = False (source:default)
>> 2018-10-30 14:22:31,305 DEBUG [ omeroweb.settings]
>> (MainThread) CORS_ORIGIN_WHITELIST = [] (source:default)
>> 2018-10-30 14:22:31,305 DEBUG [ omeroweb.settings]
>> (MainThread) DATABASES = {} (source:default)
>> 2018-10-30 14:22:31,305 DEBUG [ omeroweb.settings]
>> (MainThread) DEBUG = True (source:omero.web.debug)
>> 2018-10-30 14:22:31,305 DEBUG [ omeroweb.settings]
>> (MainThread) INDEX_TEMPLATE = None (source:default)
>> 2018-10-30 14:22:31,305 DEBUG [ omeroweb.settings]
>> (MainThread) LOGDIR = '/home/omero/OMERO.py/var/log' (source:default)
>> 2018-10-30 14:22:31,305 DEBUG [ omeroweb.settings]
>> (MainThread) LOGIN_LOGO = None (source:default)
>> 2018-10-30 14:22:31,305 DEBUG [ omeroweb.settings]
>> (MainThread) LOGIN_REDIRECT = {} (source:default)
>> 2018-10-30 14:22:31,305 DEBUG [ omeroweb.settings]
>> (MainThread) LOGIN_VIEW = 'weblogin' (source:default)
>> 2018-10-30 14:22:31,305 DEBUG [ omeroweb.settings]
>> (MainThread) MIDDLEWARE_CLASSES_LIST = [{u'index': 1, u'class':
>> u'django.middleware.common.BrokenLinkEmailsMiddleware'}, {u'index': 2,
>> u'class': u'django.middleware.common.CommonMiddleware'}, {u'index': 3,
>> u'class': u'django.contrib.sessions.middleware.SessionMiddleware'},
>> {u'index': 4, u'class': u'django.middleware.csrf.CsrfViewMiddleware'},
>> {u'index': 5, u'class':
>> u'django.contrib.messages.middleware.MessageMiddleware'}, {u'index': 0,
>> u'class': u'whitenoise.middleware.WhiteNoiseMiddleware'}]
>> (source:omero.web.middleware)
>> 2018-10-30 14:22:31,306 DEBUG [ omeroweb.settings]
>> (MainThread) OPEN_WITH = [[u'Image viewer', u'webgateway',
>> {u'supported_objects': [u'image'], u'script_url':
>> u'webclient/javascript/ome.openwith_viewer.js'}], [u'omero_figure',
>> u'new_figure', {u'supported_objects': [u'images'], u'target': u'_blank',
>> u'label': u'OMERO.figure'}]] (source:omero.web.open_with)
>> 2018-10-30 14:22:31,306 DEBUG [ omeroweb.settings]
>> (MainThread) PAGE = 200 (source:default)
>> 2018-10-30 14:22:31,306 DEBUG [ omeroweb.settings]
>> (MainThread) PING_INTERVAL = 60000 (source:default)
>> 2018-10-30 14:22:31,306 DEBUG [ omeroweb.settings]
>> (MainThread) PIPELINE_CSS_COMPRESSOR = None (source:default)
>> 2018-10-30 14:22:31,306 DEBUG [ omeroweb.settings]
>> (MainThread) PIPELINE_JS_COMPRESSOR = None (source:default)
>> 2018-10-30 14:22:31,306 DEBUG [ omeroweb.settings]
>> (MainThread) STATICFILES_STORAGE = 'pipeline.storage.PipelineStorage'
>> (source:default)
>> 2018-10-30 14:22:31,306 DEBUG [ omeroweb.settings]
>> (MainThread) FORCE_SCRIPT_NAME = '/omero' (source:omero.web.prefix)
>> 2018-10-30 14:22:31,306 DEBUG [ omeroweb.settings]
>> (MainThread) PUBLIC_CACHE_ENABLED = False (source:default)
>> 2018-10-30 14:22:31,306 DEBUG [ omeroweb.settings]
>> (MainThread) PUBLIC_CACHE_KEY = u'********************' (source:default)
>> 2018-10-30 14:22:31,306 DEBUG [ omeroweb.settings]
>> (MainThread) PUBLIC_CACHE_TIMEOUT = 86400 (source:default)
>> 2018-10-30 14:22:31,306 DEBUG [ omeroweb.settings]
>> (MainThread) PUBLIC_ENABLED = False (source:default)
>> 2018-10-30 14:22:31,306 DEBUG [ omeroweb.settings]
>> (MainThread) PUBLIC_GET_ONLY = True (source:default)
>> 2018-10-30 14:22:31,306 DEBUG [ omeroweb.settings]
>> (MainThread) PUBLIC_PASSWORD = u'********************' (source:default)
>> 2018-10-30 14:22:31,307 DEBUG [ omeroweb.settings]
>> (MainThread) PUBLIC_SERVER_ID = 1 (source:default)
>> 2018-10-30 14:22:31,307 DEBUG [ omeroweb.settings]
>> (MainThread) PUBLIC_URL_FILTER = <_sre.SRE_Pattern object at
>> 0x7f0343621660> (source:default)
>> 2018-10-30 14:22:31,307 DEBUG [ omeroweb.settings]
>> (MainThread) PUBLIC_USER = None (source:default)
>> 2018-10-30 14:22:31,307 DEBUG [ omeroweb.settings]
>> (MainThread) SECRET_KEY = u'********************' (source:default)
>> 2018-10-30 14:22:31,307 DEBUG [ omeroweb.settings]
>> (MainThread) SECURE = False (source:default)
>> 2018-10-30 14:22:31,307 DEBUG [ omeroweb.settings]
>> (MainThread) SECURE_PROXY_SSL_HEADER = [] (source:default)
>> 2018-10-30 14:22:31,307 DEBUG [ omeroweb.settings]
>> (MainThread) SERVER_LIST = [[u'localhost', 4064, u'omero']] (source:default)
>> 2018-10-30 14:22:31,307 DEBUG [ omeroweb.settings]
>> (MainThread) SESSION_COOKIE_AGE = 86400 (source:default)
>> 2018-10-30 14:22:31,307 DEBUG [ omeroweb.settings]
>> (MainThread) SESSION_COOKIE_DOMAIN = None (source:default)
>> 2018-10-30 14:22:31,307 DEBUG [ omeroweb.settings]
>> (MainThread) SESSION_COOKIE_NAME = None (source:default)
>> 2018-10-30 14:22:31,307 DEBUG [ omeroweb.settings]
>> (MainThread) SESSION_ENGINE = 'django.contrib.sessions.backends.cache'
>> (source:omero.web.session_engine)
>> 2018-10-30 14:22:31,307 DEBUG [ omeroweb.settings]
>> (MainThread) SESSION_EXPIRE_AT_BROWSER_CLOSE = True (source:default)
>> 2018-10-30 14:22:31,307 DEBUG [ omeroweb.settings]
>> (MainThread) SHARING_OPENGRAPH = {} (source:default)
>> 2018-10-30 14:22:31,307 DEBUG [ omeroweb.settings]
>> (MainThread) SHARING_TWITTER = {} (source:default)
>> 2018-10-30 14:22:31,308 DEBUG [ omeroweb.settings]
>> (MainThread) STATIC_ROOT =
>> '/home/omero/OMERO.py/lib/python/omeroweb/static' (source:default)
>> 2018-10-30 14:22:31,308 DEBUG [ omeroweb.settings]
>> (MainThread) STATIC_URL = '/omero/static/' (source:omero.web.static_url)
>> 2018-10-30 14:22:31,308 DEBUG [ omeroweb.settings]
>> (MainThread) STATICFILES_DIRS = [] (source:default)
>> 2018-10-30 14:22:31,308 DEBUG [ omeroweb.settings]
>> (MainThread) TEMPLATE_DIRS = [] (source:default)
>> 2018-10-30 14:22:31,308 DEBUG [ omeroweb.settings]
>> (MainThread) THUMBNAILS_BATCH = 50 (source:default)
>> 2018-10-30 14:22:31,308 DEBUG [ omeroweb.settings]
>> (MainThread) CENTER_PLUGINS = [] (source:default)
>> 2018-10-30 14:22:31,308 DEBUG [ omeroweb.settings]
>> (MainThread) METADATA_PANES = [{u'index': 1, u'name': u'tag', u'label':
>> u'Tags'}, {u'index': 2, u'name': u'map', u'label': u'Key-Value Pairs'},
>> {u'index': 3, u'name': u'table', u'label': u'Tables'}, {u'index': 4,
>> u'name': u'file', u'label': u'Attachments'}, {u'index': 5, u'name':
>> u'comment', u'label': u'Comments'}, {u'index': 6, u'name': u'rating',
>> u'label': u'Ratings'}, {u'index': 7, u'name': u'other', u'label':
>> u'Others'}] (source:default)
>> 2018-10-30 14:22:31,308 DEBUG [ omeroweb.settings]
>> (MainThread) RIGHT_PLUGINS = [[u'Acquisition',
>> u'webclient/data/includes/right_plugin.acquisition.js.html',
>> u'metadata_tab'], [u'Preview',
>> u'webclient/data/includes/right_plugin.preview.js.html', u'preview_tab']]
>> (source:default)
>> 2018-10-30 14:22:31,308 DEBUG [ omeroweb.settings]
>> (MainThread) TOP_LINKS = [[u'Data', u'webindex', {u'title': u'Browse Data
>> via Projects, Tags etc'}], [u'History', u'history', {u'title':
>> u'History'}], [u'Help', u'https://help.openmicroscopy.org/', {u'target':
>> u'new', u'title': u'Open OMERO user guide in a new tab'}], [u'Figure',
>> u'figure_index', {u'target': u'_blank', u'title': u'Open Figure in new
>> tab'}]] (source:omero.web.ui.top_links)
>> 2018-10-30 14:22:31,308 DEBUG [ omeroweb.settings]
>> (MainThread) USE_X_FORWARDED_HOST = False (source:default)
>> 2018-10-30 14:22:31,308 DEBUG [ omeroweb.settings]
>> (MainThread) VIEWER_VIEW = 'omero_iviewer.views.index'
>> (source:omero.web.viewer.view)
>> 2018-10-30 14:22:31,308 DEBUG [ omeroweb.settings]
>> (MainThread) WEBGATEWAY_CACHE = None (source:default)
>> 2018-10-30 14:22:31,308 DEBUG [ omeroweb.settings]
>> (MainThread) WSGI_ARGS = None (source:default)
>> 2018-10-30 14:22:31,308 DEBUG [ omeroweb.settings]
>> (MainThread) WSGI_TIMEOUT = 60 (source:default)
>> 2018-10-30 14:22:31,309 DEBUG [ omeroweb.settings]
>> (MainThread) WSGI_WORKERS = 5 (source:default)
>> 2018-10-30 14:22:31,309 DEBUG [ omeroweb.settings]
>> (MainThread) Attempting to import additional app settings for app:
>> omero_figure
>> 2018-10-30 14:22:31,309 INFO [ root]
>> (MainThread) Processing custom settings for module omero_figure.settings
>> 2018-10-30 14:22:31,309 DEBUG [ omeroweb.settings]
>> (MainThread) Attempting to import additional app settings for app:
>> omero_iviewer
>> 2018-10-30 14:22:31,309 DEBUG [ omeroweb.settings]
>> (MainThread) Couldn't import settings from app: omero_iviewer
>> 2018-10-30 14:22:31,309 DEBUG [ omeroweb.settings]
>> (MainThread) INSTALLED_APPS=[('django.contrib.staticfiles',
>> 'django.contrib.auth', 'django.contrib.contenttypes',
>> 'django.contrib.sessions', 'django.contrib.sites', u'omero_figure',
>> u'omero_iviewer', 'omeroweb.feedback', 'omeroweb.webadmin',
>> 'omeroweb.webclient', 'omeroweb.webgateway', 'omeroweb.webredirect',
>> 'omeroweb.api', 'pipeline')]
>>
>>
>> On Tue, Oct 30, 2018 at 1:05 PM Simon Li <spli at dundee.ac.uk> wrote:
>>
>>> Hi Jens
>>>
>>> Do you see anything relevant in your OMERO.web log
>>> (var/log/OMEROweb.log) and nginx logs (access.log, error.log) whilst
>>> logging in? If there's nothing could you temporarily enable debug logs (omero
>>> config set omero.web.debug True) and see if there's any more
>>> information in OMEROweb.log. If that doesn't help could you activate your
>>> web virtualenv in a terminal and attempt to connect to your server using
>>> bin/omero login?
>>>
>>> Simon
>>>
>>> On Tue, 30 Oct 2018 at 10:45, Jens Eriksson <jenseri at gmail.com> wrote:
>>>
>>>> Hello,
>>>>
>>>> I have recently installed OMERO.server 5.4.9 on an Ubuntu 16.04 system.
>>>> The server works as intended with the default ports open. OMERO-insight can
>>>> be used to connect to and administer the server as normal.
>>>>
>>>> I have also installed OMERO.web separately from OMERO.server in a
>>>> virtualenv, as described here
>>>> <https://docs.openmicroscopy.org/omero/5.4.9/sysadmins/unix/install-web/walkthrough/omeroweb-install-ubuntu-ice3.6.html>.
>>>> I can connect to the OMERO.web login page (my.serverip/omero), but entering
>>>> a correct username and pass simply reloads the page. If the server is down,
>>>> then the OMERO.web login page displays the "cannot connect to
>>>> server"-message. Also, if I enter the wrong password and/or user then the
>>>> login page displays: "Error: Connection not available, please check
>>>> your user name and password."
>>>>
>>>> It seems like OMERO.web is in communication with the OMERO.server, but
>>>> that something is not configured correctly when going from the login in to
>>>> the rest of OMERO.web.
>>>>
>>>> OMERO.server/bin/omero admin diagnostics:
>>>>
>>>>
>>>> ================================================================================
>>>> OMERO Diagnostics (admin) 5.4.9-ice36-b101
>>>>
>>>> ================================================================================
>>>>
>>>> Commands: java -version 1.8.0 (/usr/bin/java)
>>>> Commands: python -V 2.7.12 (/usr/bin/python)
>>>> Commands: icegridnode --version 3.6.4
>>>> (/usr/bin/icegridnode)
>>>> Commands: icegridadmin --version 3.6.4
>>>> (/usr/bin/icegridadmin)
>>>> Commands: psql --version 9.6.10 (/usr/bin/psql)
>>>>
>>>> Server: icegridnode not started
>>>>
>>>> Log dir: /home/omero/OMERO.server/var/log exists
>>>> Log files: Blitz-0.log 217.0 MB errors=39
>>>> warnings=3111
>>>> Log files: DropBox.log 25.0 KB errors=0
>>>> warnings=10
>>>> Log files: FileServer.log 3.0 KB
>>>> Log files: Indexer-0.log 365.0 KB
>>>> Log files: MonitorServer.log 13.0 KB
>>>> Log files: OMEROweb.lock 0.0 KB
>>>> Log files: OMEROweb.log 0.0 KB errors=0
>>>> warnings=1
>>>> Log files: PixelData-0.log 301.0 KB errors=42
>>>> warnings=4
>>>> Log files: Processor-0.log 1.0 MB errors=0
>>>> warnings=5
>>>> Log files: Tables-0.log 17.0 KB errors=0
>>>> warnings=6
>>>> Log files: TestDropBox.log n/a
>>>> Log files: master.err 13.0 KB errors=7
>>>> warnings=11
>>>> Log files: master.out 0.0 KB
>>>> Log files: Total size 218.93 MB
>>>>
>>>>
>>>> Environment:OMERO_HOME=(unset)
>>>> Environment:OMERO_NODE=(unset)
>>>> Environment:OMERO_MASTER=(unset)
>>>> Environment:OMERO_USERDIR=(unset)
>>>> Environment:OMERO_TMPDIR=(unset)
>>>>
>>>> Environment:PATH=/home/omero/bin:/home/omero/.local/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/usr/local/games:/snap/bin
>>>> Environment:PYTHONPATH=(unset)
>>>> Environment:ICE_HOME=(unset)
>>>> Environment:LD_LIBRARY_PATH=(unset)
>>>> Environment:DYLD_LIBRARY_PATH=(unset)
>>>>
>>>> Cannot list deployed applications.
>>>> OMERO data dir:'/tank/OMERO' Exists? True Is
>>>> writable? True
>>>> OMERO temp dir:'/home/omero/omero/tmp' Exists? True Is
>>>> writable? True (Size: 0)
>>>>
>>>> JVM settings: Blitz-${index} -Xmx7200m
>>>> -XX:MaxPermSize=1g -XX:+IgnoreUnrecognizedVMOptions
>>>> JVM settings: Indexer-${index} -Xmx4800m
>>>> -XX:MaxPermSize=1g -XX:+IgnoreUnrecognizedVMOptions
>>>> JVM settings: PixelData-${index} -Xmx7200m
>>>> -XX:MaxPermSize=1g -XX:+IgnoreUnrecognizedVMOptions
>>>> JVM settings: Repository-${index} -Xmx4800m
>>>> -XX:MaxPermSize=1g -XX:+IgnoreUnrecognizedVMOptions
>>>>
>>>> OMERO.py/bin/omero config get:
>>>>
>>>> omero.web.application_server=wsgi-tcp
>>>> omero.web.application_server.max_requests=500
>>>> omero.web.apps=["omero_figure", "omero_iviewer"]
>>>> omero.web.debug=False
>>>> omero.web.middleware=[{"index": 1, "class":
>>>> "django.middleware.common.BrokenLinkEmailsMiddleware"}, {"index": 2,
>>>> "class": "django.middleware.common.CommonMiddleware"}, {"index": 3,
>>>> "class": "django.contrib.sessions.middleware.SessionMiddleware"}, {"index":
>>>> 4, "class": "django.middleware.csrf.CsrfViewMiddleware"}, {"index": 5,
>>>> "class": "django.contrib.messages.middleware.MessageMiddleware"}, {"index":
>>>> 0, "class": "whitenoise.middleware.WhiteNoiseMiddleware"}]
>>>> omero.web.open_with=[["Image viewer", "webgateway",
>>>> {"supported_objects": ["image"], "script_url":
>>>> "webclient/javascript/ome.openwith_viewer.js"}], ["omero_figure",
>>>> "new_figure", {"supported_objects": ["images"], "target": "_blank",
>>>> "label": "OMERO.figure"}]]
>>>> omero.web.prefix=/omero
>>>> omero.web.session_engine=django.contrib.sessions.backends.cache
>>>> omero.web.static_url=/omero/static/
>>>> omero.web.ui.top_links=[["Data", "webindex", {"title": "Browse Data via
>>>> Projects, Tags etc"}], ["History", "history", {"title": "History"}],
>>>> ["Help", "https://help.openmicroscopy.org/", {"target": "new",
>>>> "title": "Open OMERO user guide in a new tab"}], ["Figure", "figure_index",
>>>> {"target": "_blank", "title": "Open Figure in new tab"}]]
>>>> omero.web.viewer.view=omero_iviewer.views.index
>>>>
>>>>
>>>> Thank you and have a nice day!
>>>>
>>>> Jens Eriksson
>>>> Sellin Imaging Plattform
>>>> Uppsala University
>>>>
>>>> _______________________________________________
>>>> ome-users mailing list
>>>> ome-users at lists.openmicroscopy.org.uk
>>>> http://lists.openmicroscopy.org.uk/mailman/listinfo/ome-users
>>>>
>>>
>>> The University of Dundee is a registered Scottish Charity, No: SC015096
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>>> ome-users at lists.openmicroscopy.org.uk
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>>>
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>
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