[ome-users] Problem opening <dot>nd2 file using FIJI

[Kaustav Bera]

Hi!


I am trying to open a file acquired by Nikon A1 confocal system using FIJI. I have updated both the FIJI and the bioformats plugin before opening the file. Its a z stack at 8 different time points and two different channels. When I open it using FIJI the file opens with the two channels as expected but the z stacks and the time points are all merged as a time sequence. However when I open the file using NIS Viewer, both the metadata and the image are displayed properly. Please find attached some screen-shots for your kind referral.

Any suggestions to curtail this problem will be highly appreciated. I can also forward the particular file if required.


System info:

Operating System: Windows 7 Professional edition?


Thanks and regards,

Kaustav Bera

Johns Hopkins University

Baltimore, MD

USA

-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://lists.openmicroscopy.org.uk/pipermail/ome-users/attachments/20180222/d19e7ad3/attachment.html>
-------------- next part --------------
A non-text attachment was scrubbed...
Name: File_as_seen_in_NIS_Elements_Viewer.JPG
Type: image/jpeg
Size: 118637 bytes
Desc: File_as_seen_in_NIS_Elements_Viewer.JPG
URL: <http://lists.openmicroscopy.org.uk/pipermail/ome-users/attachments/20180222/d19e7ad3/attachment.jpe>
-------------- next part --------------
A non-text attachment was scrubbed...
Name: Image_Properties_in_NIS_Elements_Viewer.JPG
Type: image/jpeg
Size: 57498 bytes
Desc: Image_Properties_in_NIS_Elements_Viewer.JPG
URL: <http://lists.openmicroscopy.org.uk/pipermail/ome-users/attachments/20180222/d19e7ad3/attachment-0001.jpe>
-------------- next part --------------
A non-text attachment was scrubbed...
Name: Original_Metadata_form_FIJI.csv
Type: application/octet-stream
Size: 60992 bytes
Desc: Original_Metadata_form_FIJI.csv
URL: <http://lists.openmicroscopy.org.uk/pipermail/ome-users/attachments/20180222/d19e7ad3/attachment.obj>
-------------- next part --------------
A non-text attachment was scrubbed...
Name: FIJI_Import_Conditions.JPG
Type: image/jpeg
Size: 70793 bytes
Desc: FIJI_Import_Conditions.JPG
URL: <http://lists.openmicroscopy.org.uk/pipermail/ome-users/attachments/20180222/d19e7ad3/attachment-0002.jpe>