[ome-users] Operetta XML

[Laurent Guerard]

Hi Mark,

Thanks for the info, glad to see that it's not /just/ for us.

I think we can manage for the moment with these weird image name, but 
the plate one was really the most problematic part of the issue. We'll 
then wait for any news on the single image side :)

Thanks again for the help.

Best,
Laurent Guerard

On 17/04/2018 14:28, Mark Carroll wrote:
> On 04/12/2018 02:55 PM, Laurent Guerard wrote:
>
>> However, it seems that the single image name is still having problem. >
>> Having these infos without the "MeasurementIndex.columbusIDX.xml" name
>> would be perfect
>
> You're absolutely right. We've tracked this down to
> https://github.com/openmicroscopy/openmicroscopy/blob/v5.4.5/components/blitz/src/ome/formats/model/PixelsProcessor.java#L135 
>
> which attempts to address
> https://github.com/openmicroscopy/design/issues/57. I'll do a bit more
> investigating but this does look like something that we could and should
> fix and that has caused us trouble in other ways.
>
> In the meantime, my best suggestion would be to write and upload a
> little server-side script that your users can run to fix image names
> post-import. With luck somebody else may have a better idea for a
> workaround. I'll try to figure a minimal example for us to use as a
> reference in fixing the issue.
>
> -- Mark
>
> The University of Dundee is a registered Scottish Charity, No: SC015096
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