[ome-users] Bug report: Cannot open jp2 file created by StereoInvestigator

[Sebastien Besson (Staff)]

Great thanks,

since the Bio-Formats JAR is not on the static class path, the first step of the bfopen
command is to add the library to the dynamic class path and allow the classes to be
used.

The first 2 results look sensible. Could you give us the output of the following call as
well (after trying bfopen):

>> whereisjavaclassloadingfrom('jj2000.j2k.fileformat.reader.FileFormatReader’)

Best,

Sebastien

On 30 Oct 2017, at 13:41, Kouichi C. Nakamura <kouichi.c.nakamura at gmail.com<mailto:kouichi.c.nakamura at gmail.com>> wrote:


Dear Sebastian,

For R2017b, yes, I indeed used `whereisjavaclassloadingfrom` immediately after launching, apparently which was not right.

After trying bfopen once (with an error), I tried the commands again. Below are the results.

Best,

Kouichi


>> whereisjavaclassloadingfrom('com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageReader')
Version: 9.3.0.713579 (R2017b)
Class:       com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageReader
ClassLoader: com.mathworks.jmi.CustomURLClassLoader at 89c10b7
URL:         jar:file:/D:/Dropbox/Private_Dropbox/matlab_toolbox/bfmatlab/bioformats_package.jar!/com/sun/media/imageioimpl/plugins/jpeg2000/J2KImageReader.class
>> whereisjavaclassloadingfrom('com.sun.media.imageioimpl.plugins.jpeg2000.J2KReadState')
Version: 9.3.0.713579 (R2017b)
Class:       com.sun.media.imageioimpl.plugins.jpeg2000.J2KReadState
ClassLoader: com.mathworks.jmi.CustomURLClassLoader at 89c10b7
URL:         jar:file:/D:/Dropbox/Private_Dropbox/matlab_toolbox/bfmatlab/bioformats_package.jar!/com/sun/media/imageioimpl/plugins/jpeg2000/J2KReadState.class



--
Kouichi C. Nakamura, PhD
Senior Postdoctoral Neuroscientist
MRC Brain Network Dynamics Unit
University of Oxford
Mansfield Road, Oxford OX1 3TH, United Kingdom
+44-1865-271582 (office)
http://www.mrcbndu.ox.ac.uk/people/dr-kouichi-c-nakamura
kouichi.c.nakamura at gmail.com<mailto:kouichi.c.nakamura at gmail.com>
kouichi.nakamura at pharm.ox.ac.uk<mailto:kouichi.nakamura at pharm.ox.ac.uk>

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