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Great thanks,
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<div class="">since the Bio-Formats JAR is not on the static class path, the first step of the bfopen</div>
<div class="">command is to add the library to the dynamic class path and allow the classes to be</div>
<div class="">used.</div>
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<div class="">The first 2 results look sensible. Could you give us the output of the following call as</div>
<div class="">well (after trying bfopen):</div>
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<p class="">>> whereisjavaclassloadingfrom('jj2000.j2k.fileformat.reader.FileFormatReader’)</p>
<p class="">Best,</p>
<p class="">Sebastien</p>
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<blockquote type="cite" class="">
<div class="">On 30 Oct 2017, at 13:41, Kouichi C. Nakamura <<a href="mailto:kouichi.c.nakamura@gmail.com" class="">kouichi.c.nakamura@gmail.com</a>> wrote:</div>
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<p class="">Dear Sebastian,</p>
<p class="">For R2017b, yes, I indeed used `<i class="">whereisjavaclassloadingfrom`
</i>immediately after launching, apparently which was not right.<br class="">
</p>
<p class="">After trying bfopen once (with an error), I tried the commands again. Below are the results.<br class="">
</p>
<p class="">Best,</p>
<p class="">Kouichi<br class="">
</p>
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<p class="">>> whereisjavaclassloadingfrom('com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageReader')<br class="">
Version: 9.3.0.713579 (R2017b)<br class="">
Class: com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageReader<br class="">
ClassLoader: com.mathworks.jmi.CustomURLClassLoader@89c10b7<br class="">
URL: <a class="moz-txt-link-freetext" href="jar:file:/D:/Dropbox/Private_Dropbox/matlab_toolbox/bfmatlab/bioformats_package.jar!/com/sun/media/imageioimpl/plugins/jpeg2000/J2KImageReader.class">
jar:file:/D:/Dropbox/Private_Dropbox/matlab_toolbox/bfmatlab/bioformats_package.jar!/com/sun/media/imageioimpl/plugins/jpeg2000/J2KImageReader.class</a><br class="">
>> whereisjavaclassloadingfrom('com.sun.media.imageioimpl.plugins.jpeg2000.J2KReadState')<br class="">
Version: 9.3.0.713579 (R2017b)<br class="">
Class: com.sun.media.imageioimpl.plugins.jpeg2000.J2KReadState<br class="">
ClassLoader: com.mathworks.jmi.CustomURLClassLoader@89c10b7<br class="">
URL: <a class="moz-txt-link-freetext" href="jar:file:/D:/Dropbox/Private_Dropbox/matlab_toolbox/bfmatlab/bioformats_package.jar!/com/sun/media/imageioimpl/plugins/jpeg2000/J2KReadState.class">
jar:file:/D:/Dropbox/Private_Dropbox/matlab_toolbox/bfmatlab/bioformats_package.jar!/com/sun/media/imageioimpl/plugins/jpeg2000/J2KReadState.class</a><br class="">
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<pre class="moz-signature" cols="72">--
Kouichi C. Nakamura, PhD
Senior Postdoctoral Neuroscientist
MRC Brain Network Dynamics Unit
University of Oxford
Mansfield Road, Oxford OX1 3TH, United Kingdom
+44-1865-271582 (office)
<a class="moz-txt-link-freetext" href="http://www.mrcbndu.ox.ac.uk/people/dr-kouichi-c-nakamura">http://www.mrcbndu.ox.ac.uk/people/dr-kouichi-c-nakamura</a>
<a class="moz-txt-link-abbreviated" href="mailto:kouichi.c.nakamura@gmail.com">kouichi.c.nakamura@gmail.com</a>
<a class="moz-txt-link-abbreviated" href="mailto:kouichi.nakamura@pharm.ox.ac.uk">kouichi.nakamura@pharm.ox.ac.uk</a></pre>
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