[ome-users] Bug report: Cannot open jp2 file created by StereoInvestigator

[Kouichi C. Nakamura]

Hi David,

I tried deployment of javaclassoath.txt to the folder, but I got a 
warning and then error message.

Best,

Kouichi


Warning: "bioformats_package.jar" is already specified on static java path.

Reading series #1

Error using bfGetPlane 
<matlab:matlab.internal.language.introspective.errorDocCallback%28%27bfGetPlane%27,%20%27D:%5CDropbox%5CPrivate_Dropbox%5Cmatlab_toolbox%5Cbfmatlab%5CbfGetPlane.m%27,%2078%29> 
(line 78 
<matlab:%20opentoline%28%27D:%5CDropbox%5CPrivate_Dropbox%5Cmatlab_toolbox%5Cbfmatlab%5CbfGetPlane.m%27,78,0%29>)
Java exception occurred:
java.lang.RuntimeException: 
jj2000.j2k.fileformat.reader.FileFormatReader.<init>(Ljj2000/j2k/io/RandomAccessIO;Lcom/sun/media/imageioimpl/plugins/jpeg2000/J2KMetadata;)V
at 
com.sun.media.imageioimpl.plugins.jpeg2000.J2KReadState.initializeRead(J2KReadState.java:729)
at 
com.sun.media.imageioimpl.plugins.jpeg2000.J2KReadState.<init>(J2KReadState.java:241)
at 
com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageReader.readRaster(J2KImageReader.java:551)
at 
ome.codecs.services.JAIIIOServiceImpl.readRaster(JAIIIOServiceImpl.java:177)
at ome.codecs.JPEG2000Codec.decompress(JPEG2000Codec.java:296)
at ome.codecs.JPEG2000Codec.decompress(JPEG2000Codec.java:267)
at loci.formats.codec.WrappedCodec.decompress(WrappedCodec.java:132)
at loci.formats.codec.JPEG2000Codec.decompress(JPEG2000Codec.java:63)
at loci.formats.in.JPEG2000Reader.openBytes(JPEG2000Reader.java:182)
at loci.formats.ImageReader.openBytes(ImageReader.java:457)
at loci.formats.ChannelFiller.openBytes(ChannelFiller.java:156)
at loci.formats.ChannelFiller.openBytes(ChannelFiller.java:148)
at loci.formats.ChannelSeparator.openBytes(ChannelSeparator.java:198)
at loci.formats.ChannelSeparator.openBytes(ChannelSeparator.java:159)
Caused by: java.lang.NoSuchMethodError: 
jj2000.j2k.fileformat.reader.FileFormatReader.<init>(Ljj2000/j2k/io/RandomAccessIO;Lcom/sun/media/imageioimpl/plugins/jpeg2000/J2KMetadata;)V
at 
com.sun.media.imageioimpl.plugins.jpeg2000.J2KReadState.initializeRead(J2KReadState.java:450)
... 13 more
Error in bfopen 
<matlab:matlab.internal.language.introspective.errorDocCallback%28%27bfopen%27,%20%27D:%5CDropbox%5CPrivate_Dropbox%5Cmatlab_toolbox%5Cbfmatlab%5Cbfopen.m%27,%20150%29> 
(line 150 
<matlab:%20opentoline%28%27D:%5CDropbox%5CPrivate_Dropbox%5Cmatlab_toolbox%5Cbfmatlab%5Cbfopen.m%27,150,0%29>)
arr = bfGetPlane(r, i, varargin{:});

  .

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