[ome-users] bioformats czi file reading

[Alejandro Pedro Pariani]

Hi, 
can't get bioformats to open some czi files captured on a new Zeiss
LSM880.  I've tried to do so using Fiji and ImageJ
Example error message below:

(Fiji Is Just) ImageJ 2.0.0-rc-43/1.51r; Java 1.6.0_24 [64-bit]; Windows NT (unknown) 6.2; 25MB of 4509MB (<1%)
 
java.lang.NumberFormatException: null
	at java.lang.Integer.parseInt(Integer.java:417)
	at java.lang.Integer.parseInt(Integer.java:499)
	at loci.formats.in.ZeissCZIReader.translateExperiment(ZeissCZIReader.java:2268)
	at loci.formats.in.ZeissCZIReader.translateMetadata(ZeissCZIReader.java:1329)
	at loci.formats.in.ZeissCZIReader.initFile(ZeissCZIReader.java:731)
	at loci.formats.FormatReader.setId(FormatReader.java:1426)
	at loci.plugins.in.ImportProcess.initializeFile(ImportProcess.java:505)
	at loci.plugins.in.ImportProcess.execute(ImportProcess.java:143)
	at loci.plugins.in.Importer.showDialogs(Importer.java:140)
	at loci.plugins.in.Importer.run(Importer.java:76)
	at loci.plugins.LociImporter.run(LociImporter.java:78)
	at ij.IJ.runUserPlugIn(IJ.java:221)
	at ij.IJ.runPlugIn(IJ.java:185)
	at ij.IJ.runPlugIn(IJ.java:174)
	at HandleExtraFileTypes.openImage(HandleExtraFileTypes.java:499)
	at HandleExtraFileTypes.run(HandleExtraFileTypes.java:72)
	at ij.IJ.runUserPlugIn(IJ.java:221)
	at ij.IJ.runPlugIn(IJ.java:185)
	at ij.IJ.runPlugIn(IJ.java:174)
	at ij.io.Opener.openWithHandleExtraFileTypes(Opener.java:514)
	at ij.io.Opener.openImage(Opener.java:368)
	at ij.io.Opener.openImage(Opener.java:242)
	at ij.io.Opener.open(Opener.java:109)
	at ij.io.Opener.openAndAddToRecent(Opener.java:291)
	at ij.plugin.DragAndDrop.openFile(DragAndDrop.java:192)
	at ij.plugin.DragAndDrop.run(DragAndDrop.java:159)
	at java.lang.Thread.run(Thread.java:662)

Cheers, 

Alexander Peter Pariani
PhD student
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