[ome-users] Bug in Fiji

[Faflikova, Tereza]

Dear OME users,

recently I experienced an error within the Fiji. I tried to open a .nd file and this error message popped up:



(Fiji Is Just) ImageJ 2.0.0-rc-61/1.51q; Java 1.8.0_66 [64-bit]; Windows 7 6.1; 64MB of 12131MB (<1%)

java.lang.IndexOutOfBoundsException: Index: 4, Size: 2
 at java.util.ArrayList.rangeCheck(ArrayList.java:653)
 at java.util.ArrayList.get(ArrayList.java:429)
 at ome.xml.model.Instrument.getLightSource(Instrument.java:353)
 at ome.xml.meta.OMEXMLMetadataImpl.setLaserID(OMEXMLMetadataImpl.java:9512)
 at ome.xml.meta.FilterMetadata.setLaserID(FilterMetadata.java:1557)
 at loci.formats.in.MetamorphReader.initFile(MetamorphReader.java:970)
 at loci.formats.FormatReader.setId(FormatReader.java:1397)
 at loci.plugins.in.ImportProcess.initializeFile(ImportProcess.java:498)
 at loci.plugins.in.ImportProcess.execute(ImportProcess.java:141)
 at loci.plugins.in.Importer.showDialogs(Importer.java:140)
 at loci.plugins.in.Importer.run(Importer.java:76)
 at loci.plugins.LociImporter.run(LociImporter.java:78)
 at ij.IJ.runUserPlugIn(IJ.java:219)
 at ij.IJ.runPlugIn(IJ.java:183)
 at ij.Executer.runCommand(Executer.java:137)
 at ij.Executer.run(Executer.java:66)
 at java.lang.Thread.run(Thread.java:745)

The file was an over-night Experiment consisting of 4 stages, 151 time Points and 17 Z-stacks (and 3 channels).

Can you please also send me the FTP Server address in order to upload the non-working file? The whole file has 41GB. I also cannot open single .stk files.



Thank you for your help

If you need more info about the Problem, please let me know.



All the best,

Tereza
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