[ome-users] Axioscan czi opens cropped in Fiji

[Balaji Ramalingam (Staff)]

Dear Kai,

Thank you for sharing your issue and the file associated with the same.

There seems to be an issue with reading the dimensions appropriately in this file and I have created a card on this front,
https://trello.com/c/n6KSnhed/198-axioscan-czi-file-dimensions-issue

This will get reviewed at the earliest.
Please follow the card to get more updates on the same.

Hope that helps.
Best,
Balaji

From: ome-users <ome-users-bounces at lists.openmicroscopy.org.uk> on behalf of Kai Schleicher <kai.schleicher at unibas.ch>
Reply-To: OME User Support List <ome-users at lists.openmicroscopy.org.uk>
Date: Thursday, 9 November 2017 at 13:56
To: "ome-users at lists.openmicroscopy.org.uk" <ome-users at lists.openmicroscopy.org.uk>
Subject: [ome-users] Axioscan czi opens cropped in Fiji


Dear OME-team,

A user of ours has encountered a curious problem when working with his *.czi files<https://filesender.switch.ch/filesender/?vid=7989119a-b2e4-ef49-8b2b-00005705c75a> generate by the Zeiss Axioscan Slidscanner.

In Brief, the images Open fine in Zen 2 and are complete. They do also open in the latest Fiji, but appear to be cropped (see screenshot attached).

Do you have an idea what could have happened here?

As always, thanks for your support and greetings from Basel,
Kai

--

>>Please note my NEW PHONE NUMBERS: +41 61 207 57 31 (direct) +41 61 207 22 50 (central)<<

Kai Schleicher, PhD | Research Associate in Advanced Light Microscopy | Biozentrum, University of Basel | Klingelbergstrasse 50/70 | CH-4056 Basel |

Phone: +41 61 207 57 31 (direct) +41 61 207 22 50 (central) | kai.schleicher at unibas.ch<mailto:kai.schleicher at unibas.ch> | www.biozentrum.unibas.ch<http://www.biozentrum.unibas.ch> | www.microscopynetwork.unibas.ch<http://www.microscopynetwork.unibas.ch>

The University of Dundee is a registered Scottish Charity, No: SC015096
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