[ome-users] Slide book files not opening

[Sebastien Besson (Staff)]

Hi Amanda,

thanks for contacting us.

As mentioned in a related ImageJ forum thread [1], modern Slidebook files now require
the enabling of the 3i Slidebook update site to open in Fiji - see their instructions [2].

Can you check whether this update site is enabled and the images still fail to open? If this
remains the case, we might need a failing sample file before engaging with 3i to discuss the
issue.

Best,
Sebastien


[1] http://forum.imagej.net/t/slidebook-file-opening-failed/4533
[2] https://support.intelligent-imaging.com/techanswers.php#SLDinFiji

On 23 Mar 2017, at 16:27, Amanda Balaban <nabalab90 at gmail.com<mailto:nabalab90 at gmail.com>> wrote:

Hello,

Hello. I have been receiving an error message when attempting to open a slide book file in fiji.

Exception in thread "DrawAndDrop" java.lang.ArrayIndexOutOfBoundsException: 0
at loci.formats.in.SlidebookReader.initFile(SlidebookReader.java:634)
at loci.formats.FormatReader.setId(FormatReader.java:1399)
at loci.formats.ImageReader.setId(ImageReader.java:839)
at io.scif.bf.BioFormatsFormat$Parser.typedParse(BioFormatsFormat.java:431)
at io.scif.bf.BioFormatsFormat$Parser.typedParse(BioFormatsFormat.java:413)
at io.scif.AbstractParser.parse(AbstractParser.java:253)
at io.scif.AbstractParser.parse(AbstractParser.java:336)
at io.scif.AbstractParser.parse(AbstractParser.java:52)
at io.scif.AbstractReader.setSource(AbstractReader.java:270)
at io.scif.services.DefaultInitializeService.initializeReader(DefaultInitializeService.java:90)
at io.scif.img.ImgOpener.createReader(ImgOpener.java:562)
at io.scif.img.ImgOpener.openImgs(ImgOpener.java:145)
at io.scif.services.DefaultDatasetIOService.open(DefaultDatasetIOService.java:126)
at io.scif.services.DefaultDatasetIOService.open(DefaultDatasetIOService.java:111)
at io.scif.io.DatasetIOPlugin.open(DatasetIOPlugin.java:75)
at io.scif.io.DatasetIOPlugin.open(DatasetIOPlugin.java:50)
at net.imagej.legacy.plugin.DefaultLegacyOpener.open(DefaultLegacyOpener.java:135)
at net.imagej.legacy.DefaultLegacyHooks.interceptDragAndDropFile(DefaultLegacyHooks.java:363)
at ij.plugin.DragAndDrop.openFile(DragAndDrop.java)
at ij.plugin.DragAndDrop.run(DragAndDrop.java:159)
at java.lang.Thread.run(Thread.java:745)


I am running this on a Mac. Have updated/reinstalled the latest version of fiji and java.  I have also tried this on other computers/fiji downloads witht he same result.

Thank you,

Amanda
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